RNA id: XM_039806192.1


Basic Information

Item Value
RNA id XM_039806192.1
length 1384
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120562479
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38268277 ~ 38270068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACAACAGCGTATCACTGCTGTGTTTAGATCAGAGCTCAGACTAGTTTCACTTCTCAGGAAGTGAGACTCAGACAGTCGTTGTTACTGACcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgtcccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGGAGAGGATCATAAGTACAACTACAGCTGCCCTCAGTGCAGGAAGACTttcacaccgaggcctgtccTGTTGAAAAGCACCATGTTAGCAGctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgggagaaaactcaaagcaCACAAGTCCTGTTTGCAATGTCTGGCTTCTTTCTGTGAGCAACACCTTCAGCTTCATTTTGAATCGGAGACAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagattttctgccgtactgatcagcagcttatctgttCTCTCTGCTTAATGGAggaacataaaggccacgacacagtctcagctgcagcaaaaaggactgagaggcagaaaaagcCTGCGGGGGAGTCGCCAAAGCATCCtgcagagaatccaggacagagagaaagatTCGcacaaccagagcccaagaccagagctgacttcttaaaatattcacgtgaaatcacactggatccaaacacagcaaacacacggctgttattatctgaggggaacaggaaagcaacaGTAATGAGACAACGTCAGtcttattctagtcacccagacagattcactgGCTGGTATCAGGTCTtgagtagagagagtctgactggacgttggTACTGGGAggtgaagaggagaggagaaggaggagttTCTTtagcagtcgcatacaagaaTATGAGCAGAGCAGGGGGGTCGGATGAATGTGTATTTGGATACAATGACAAATCTTGGGCGTTATAttgtaacaacaacaaatatacattttggTCCAACAATGTCCAAACTCCCATCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctATATGCTGGACTAATGGTTTATGGTTGTTATAATGGAgcctctgctgagttgtgtaactgaaatagacagaagtcatttaagggttatattctgtgttttaactctTCGACTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106270 lncRNA upstream 3000 38264735 ~ 38265277 (+) True G79367
TU106271 lncRNA upstream 3000 38264735 ~ 38265277 (+) False G79367
TU106245 lncRNA upstream 18245 38170054 ~ 38250032 (+) False G79351
TU106252 lncRNA upstream 32286 38187616 ~ 38235991 (+) True G79355
TU106256 lncRNA upstream 42805 38224568 ~ 38225472 (+) True G79359
XR_005639905.1 lncRNA downstream 97051 38367119 ~ 38367849 (+) True LOC120563039
TU106294 lncRNA downstream 103759 38373827 ~ 38376408 (+) True G79384
TU106295 lncRNA downstream 103759 38373827 ~ 38379212 (+) False G79384
TU106298 lncRNA downstream 110524 38380592 ~ 38380881 (+) True G79386
TU106282 lncRNA downstream 135043 38405111 ~ 38459995 (+) True G79374
XM_039807006.1 mRNA upstream 9242 38257203 ~ 38259035 (+) True LOC120563002
XM_039806189.1 mRNA upstream 79514 38182235 ~ 38188763 (+) False LOC120562476
XM_039806188.1 mRNA upstream 122473 38056416 ~ 38145804 (+) True nek11
XM_039804778.1 mRNA upstream 380271 37878916 ~ 37888006 (+) True cmtm7
XM_039804901.1 mRNA upstream 422563 37826889 ~ 37845714 (+) True LOC120561705
XM_039807011.1 mRNA downstream 17669 38287737 ~ 38291323 (+) True LOC120563007
XM_039806193.1 mRNA downstream 31386 38301454 ~ 38305892 (+) True LOC120562481
XM_039807031.1 mRNA downstream 133084 38403152 ~ 38428485 (+) True si:dkey-7j14.6
XM_039806195.1 mRNA downstream 163906 38433974 ~ 38455559 (+) True cmtm6
XM_039806199.1 mRNA downstream 255136 38525204 ~ 38575568 (+) True tg
TU106224 other upstream 122499 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 190628 38056416 ~ 38077649 (+) False nek11
TU106195 other upstream 384327 37878964 ~ 37883950 (+) False cmtm7
TU105717 other upstream 735208 37530690 ~ 37533069 (+) False G79007
TU106280 other downstream 31357 38301425 ~ 38303688 (+) False LOC120562481
TU106301 other downstream 163925 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 396204 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 421578 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 1031971 39302039 ~ 39304070 (+) True dcst2

Expression Profile