RNA id: XM_039806205.1


Basic Information

Item Value
RNA id XM_039806205.1
length 6475
RNA type mRNA
GC content 0.53
exon number 38
gene id LOC120562496
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39924325 ~ 39979365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgttccagatgaGCGTCTGACAGCAGAGCAGATGGATGAACAGAGGATCCAGAACGTGGCCTATCAGTACCTCTGCAGGCTGGAGGAGGCCAAGAGGTGGATGGAGGCGTGTCTGGGGGAGGAGCTCCCTGCTCCCTCCGAGCTGGAGGAGGCGCTGAGGAACGGGGTCTTCCTCGCCAAGCTGGGTCATCGCTTCGCTCCCAACGCTGTCGCCCTGAAGAAGATCTACGACCCCGAGCAGCTACGCTAccagGCGGCTGGTCTTCAGTTCCGTCACACCGACAACATCAACCACTGGAGGAACGCCATGACGACGCTCGGCCTGCCATCGATCTTTTACCCAGAAACTACAGACGTGTACGACAGGAAGAACATGCCCCGAGCGGTTTACTGCATCCACGCTCTCAGcctgTACCTGTACAGACTCGGTCTGGCTCCACAGATCCAGGATCTCTACGGGAAAGTCAAGTTCACagAGGAGGAGATCAACAACATGAAGTCTGAGCTGGATAAATATGGGATCCAGATGCCGGCCTTCAACAAGATCGGAGGGATTCTGGCCAATGAGCTGTCAGTGGACGAGGCCGCAGCCCATGCGGCGGTGATTGCCATCAACGAGGCGGTGGACAGAGGAGAGGTGGCGGTGACGGCGGGCGCTCTGAGGAACCCCAACGCTCAGCTGGCCGAGCTGCAGGACGCCCTGATGGCCGTCTACCAGGAGATGCTGCAGCAGGACAAGAACAGGAAGAGACACGCAGCCAATAGGggtGGAGGTCCAGAGGAGAAAGATATCTACGAAGAGTTTCTGACTCAGAGAGAAATCCAGAACAACATCAACCTGGTTAACGTGCGTTGGGCGGTGGAGCAGGTGGATGAAGCTCTGGACTCTGCAGATgaactctctctgctctctgctctgcagCTGCCATGTTTGGCCCTCAGGGGCCTCCGTACTGAAAACAGCCCCTGGTACCTGGACCAGCTGTCTGCAGATCGCCAGCAGAAAGCCctggAGGAGGGGTGTGTTGATCCTCTGGATCCTGACGAGCTGCAGGAAGCCGTAACCCTCGGCAACCAGGAGGCTCACCGAGCCAGGACAGtggatGCAGCGCTGCAGAAGGTGAATGAGTCTCTACGTCTCAGTGACCCCCGACACACTGTCAGCTGTCTGAtgacctctgacctgcagcTTCCTGAAGTGTTTCCATTCGCTGCAGCTCTCTACCACCGAGAGCTGCAGCTACTgcagacacagagcacacaGGGGGAGCTGCAGCAGGAGGAGCTGTTTGTTGCCGTGGAGATGCTGTCGGCTGTCGCTCTCATCAATCAGGCGTTGGAGGCGGGACGTGTGCAGCAGTTCAGCTGCTCATTGGTCAGTCCGTCTGCAGGACTCTCTGATGTTGAGGACTCTCTGCTGGACAGGTACTTTGAGTGTCTGGTTGGTTGGAAGAAGAAACAGCTGAACGGAGATCTGCTGACCTGGAATCAGCTGCAGGAAGGAATCAACTCTGTTAATAACTCAGCAGAGGACGAACACCAAcaggtggtgtgtgtgcgagtgGTGAACCAGGCCGTGCTGAGAGGAGACCCTGACCAGCTGTTGTCTGCTCTGCTGCTGCCCTCCTGTGGAGCTGAGGAGGTAACACCTGGAAACATCTGGAGGTACCTGACCCTGCTGCAGAGAGCCAGGCAGCACAGAGCCAAGGTGAGCAGAGACCCAGGAGCTGAGCTGTGGTTGGCTGATATCCAGGAAGCTGTGACGAGAGTCAATCAGCAGAGCCAGAAAGCTCTAAAGATGTGTCTGTCCCTGGCTGCAGTGAACCAGGCTGTGAAGGAGAACCGAGTGAATCAGACTCTTCGTGTCCTGAGTCTCCCTGAAGTCCAGCTGCAGGAACTACTTCCTGTCTGCGCCGCCGAGTATCAGAGAGAGCTGCTCAGCCTGATCAACCAGAGGACACTGGCAGGAGACAACAGGGTCAGTGGTTTCAGGTCCAGCTGGATGGCTCGTTTTCTTCCTGGACTTGAAAGAGACTGCAGGAAGCTGGGAGAAAACCAAGGGCTTCATCCACATACCAGTGTTCCTGGACGACGTAGATACAGGATTGTGTTTTTGTCCCCCATACAGGAAGTGGTGAGCAGGGTTTCGGGCTCGTACAGCCGCAGCGTGCTGTGGCGGAGCAGCGAAGCCCTGCTGGTCCGCCTGCAGGCCGCCAGTCGAGGCTTCCTGCTCCGACAGAAGCTGCAGGCTCGACGAGGCTACCTGAGCAGCCACACACCTGCTGTCATCATCATCCAGTCTCACTGGAGGAGGTTTGTCCAGCAGGGGGCGTACCGACGCCGGCTGCAGTTCCTCTACATGAACTGGAGAGCTGTTGTCAAGATTCAGGCGTTTGTGAAGATGTGGTTGGCGAGGAGAAAGTATCGAGCTCGACTGAGTTTCTTCAGACGCCACGTTGGCGCTGTGATAAAGATCCAGGCTTTCTTCAGGGCCAACCGAGCTCGAGAGGAGTACAGGATGCTGGTGCACTCGGCCACGCCCCCTCTGTCCGTGGTCAGGAAGTTCGTCCACCTGTTGGACCGCGGCGATGGTGACATCACCGAGGAGGCGGAGCTTCTGCGTCTGAGGGAGGAAGTAGTGCGGAGCATCCGCTTTAACCGCCAGCTGGAGGAAGACCTGACGCTGATGGACCTGAAGATCGGCCTGCTGGTCCGAAACAGAGCCACGCTGCAGgaagttgtgTCTCACTGTAAGAAGCTGACGAAGAAGAACAAGGAGCAGCTGTCAGACATGATGGACGTGGAGAGAAGTAAAGGACTGAAAGCTCTGAGccgagagaggagagagagactggaggcctaccagcacctcttcTACCTGCTGCAGaccCAGCCCCTGTACCTGGCCCAGCTGATCTTCCTGATGCCTCAGAGCCGATCCACCAGCTTCATGGAGATGTTGGTCTTCAGTCTGTTTAACTACGGATCAGACTGCAGAGACGccttcctgctgctgcagctgttcACTGCAGCACTCACACACGAGATCAGGGAGAAGGTGGAGCAGCCTCAGGACATCGTCACCGGCAACCCCACCGTCATCAAGATGCTGGTGAACTTCTACCGCCACGCTCGCGGCCAGAACTCCCTACGGGAGACTCTGGGTCCGGCTCTGCAGGACGTCCTGCTGGACCGCACGCTCAGCATCAGGACGGACCCAGTGGACGTCTATAAAACCTGGATCAACCAGACGGAGACGCAGACCGGACACAAAAGCTCTCTGCCCTACGAGGTCTCCCCCGCCGACGCTCTCAGTCACCCTGAAGTCCAGCGACGCATCGACATCGCCATCATCAACCTCAAGAACCTGACCGACCGAGTCctcaaagccatcacctccAACCTGCACAAACTGCCGTACGGTCTACGTTACACGGCGAAGGTTCTCCGAGACGCTCTGAAAGCTAAGTTCCCTGAAGCCAGCGAGGACGAGCTCTATAAGATCGTGGGGAACCTGGTCTACTACCGCTACATGAACCCGGCCGTCGTGGCTCCGGACGGCTTCGACGTGGTGGACCGGTCCGCCGGCTCGGCCCTGCAGCCGGAGCAGCGCCACATCCTGGGCTCCATCGCCCGCATGCTGCAGCACGCCGCCGCCAACAAGCACTTCCACGGAGACGGCTACCACGTCAGAGCTCTGAACCAGTACATCAGCCAGACCCACAGCCGGTTCAGGAAgttcctggtgtgtgtgtgtgacgttcCTGAACCTGAGGACAGATTCAACATGGACGAATACTCGGAGCTGCTCATCGTCAACAAACCTGTCGTCTACATCTCAGTCAGCGAGctgctcaacacacacacattgTTGTTGGATCATCAGGAGGTTCTGTGTCCTGACCCCTCCAACCCTCTCAGACTGCTGCTCAATGACCTGGGACCAGTCCCCACCCTGCAGGAACTCACTGGAGAGTCTTCTTCGTCAGCTGATCCAGGATCTGAGGTTTCTCTGACTCTCACCAACAAGTTCGACATCTTCAACGAGTCTGAGGACAGACCGGACGCCAGAGGACTGCTGCTCAGcaCCAAGCAGCTGATCATCGATGTCATCAGGACGCAGTCAGGTGACTCTCTGACAGACATGCTGAGAACCTCTGTGTCACATgaccagGAAGTGTGTCATGATTGGCTGATGCAGCGGCGAGCTCGGCAGGACGCCCGCACGCCTGACAAGATGAAGAGGAACGAGTCGCTGGTCGCCAACGGCAACCTGAGtttggaggagaagaagaggaagatccTGAGATGTCTTCGTCGTCTGGAGGGACTCGGAGTCCTGAGAGCCCCAAACCCCGAGAACCAGATCCTGCAGATGATCGCCAAGGACATCCGTCAGCAGCGTGTGCACCGCCAGCGGGGGGCGGAGCTTCAGAAACTCCGTCAGACTCTCAGCAGCCTGCAGGACAAGAGCAGCTTCCACAGCCAGCAGGTGGACTACTACAGACATtacatcacttcctgtctggACCACCTGACTCACAGcagTAAATCGACCAATAAGAAGAAGCTTCCTGCTCTTAGCTACAGCGCCGCCCGGCTGCAGGAGAAAGGAGTTCTGGTGGAGATCCAGGACCTGCCAGCTacacaGTTTAAGAACGTGGTCTTTGACATCGTCCCTGGACCGGAGAAAGGAACGTTCAACGTCAAAGCTCGATTCCTCGGCATCGAGATGGAAGAGTTCCCGCTCAAATACCAGGatctgctgcagctgcagtACGAAGGCGTGGCCGTGATGAAGATGTTCGACAAAGCCAAAATCAACGTCAACCTGCTCATCTTCCTCCTCAACAAGAAGTTCTTCAAGAAATGAAGTCCTGCTCTTCTTCTACTCTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCCTCCTCTCTACGCTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGAACCCTCCTCTCTACACTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGAACCCTCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCCTCCTCTCTACGCTCCTATCTCTGGTTATATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTGTATGCTACTAcatcatgtttttatatatCTCATAACTAACTAACCAATCAGCTAAGCTTTATCGACATGTTATTGCTGCATTATTGCACATTTTAATAAGGGAACCAAATAGTTAAATAATCATGAGACATGGTTAGTGTTGGGCATCTTCTCTACACTCCTATCTCTGCTGTTATGTCACTACGttatcttttatatatattatatatctatcTCTATATACGTCACTGtacttgtgtttgtctctcacTCTCAACGTGTAGTTCTGcttcctgtctgtgttttaATCTCACTAGAGTTTAAACAGAGTGAAGCATCTTCTCTACACTCCACTCTCTGTTTTTATACGTCACTAcgtttcctgtttttatttcctgCTAATcagacagagtgagacatcccTCTGGCTCCTATCTCTGCTCaggtttattattaataaacagACACCAGCTGATTATTTAAGAGATATCATGTACCTTCAACACTAGTGTTATTTTGGAGGGTGTAGTTTGTTCGAGGCTATAAATCAAGAACCAGAATCTGAGTTATGATATGATCTTtgagtttaaatacattttagaaaagaagCTGCTCTGATCTATAACTGTACATATTTTCTGTcactttctgttttctctcttttacttttctttttgaagcatgttaataataataaactgaatTTCTGTAGTGCTTTTCAGAC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K05767 IQGAP2_3; Ras GTPase-activating-like protein IQGAP2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107081 lncRNA upstream 5771 39803440 ~ 39918554 (+) False G79922
TU107076 lncRNA upstream 5771 39861074 ~ 39918554 (+) True G79922
TU107068 lncRNA upstream 53529 39714107 ~ 39870796 (+) False G79919
XR_005639755.1 lncRNA upstream 54364 39865784 ~ 39869961 (+) True LOC120562365
TU107102 lncRNA upstream 56564 39865777 ~ 39867761 (+) False LOC120562365
TU107113 lncRNA downstream 36194 40015559 ~ 40037161 (+) True G79944
TU107127 lncRNA downstream 51010 40030375 ~ 40099065 (+) True G79953
TU107137 lncRNA downstream 77648 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA downstream 77648 40057013 ~ 40099469 (+) False G79957
TU107142 lncRNA downstream 140805 40120170 ~ 40120511 (+) True G79960
XM_039806074.1 mRNA upstream 95621 39811855 ~ 39828704 (+) True LOC120562359
XM_039806203.1 mRNA upstream 120438 39781236 ~ 39803887 (+) True LOC120562494
XM_039806080.1 mRNA upstream 152905 39765173 ~ 39771420 (+) True LOC120562364
XM_039807012.1 mRNA upstream 497205 39425328 ~ 39427120 (+) True LOC120563008
XM_039806075.1 mRNA downstream 103665 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA downstream 103665 40083030 ~ 40093260 (+) False LOC120562361
XM_039806206.1 mRNA downstream 132068 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806078.1 mRNA downstream 160368 40139733 ~ 40152085 (+) True LOC120562363
XM_039806086.1 mRNA downstream 289583 40268948 ~ 40289601 (+) True LOC120562376
TU107036 other upstream 155475 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 460484 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 470033 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 470033 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 603000 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 337374 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 354997 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 437713 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 440504 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 440614 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile