RNA id: XM_039806206.1


Basic Information

Item Value
RNA id XM_039806206.1
length 1669
RNA type mRNA
GC content 0.46
exon number 3
gene id si:dkey-15h8.17
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40111433 ~ 40113823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAGCTCTCATCAGTTTTACCGGGCCTCCCTGTTGAAACCCTGAATTCCTTGCTGGATGGGTTTGAAGAGCTTGGTGTGGAAAGCAGGGCAGACCTTGTTTTGGTAAAAGAGAAGGACCTGGAGAAATACCTCAGACCAATCCAGTGTCGAAAATTGCTAAGTGCTTTTATGAATGAAGGACTTCTGGTGCTTGAAATAGAATGTGTTTCAGTAGCCTCTCCACCCCGCCCAAGTAGTCCATGTCGGGCGTCATTGGGTTCCCAAAGCTCTCTGAACGCTTTATCTTCACCCAAACTACCTGGCAGGTCATGGTACACAGACTTCCATGTCAAGTGGGACCAGATGCCAGCAGCAATCCGAACAGCAGTGGACAATCAAACAAGACCATCACCAGGGGACAGACAAGCTATGGTGAAGGCAGTGGTGGACCAGATGCTTCAGCATGATCAgaacccaaccagagcaacaTGTCACAGCATTGTCCGGGGCATTGTAAGGGATTATCCCAAACGTTTTGCTGATGTTGGTAGAAACGGAGACATTCTTGGAGATGGCTGTCACTCTCTTCTTCAGCAGATTAAAACGAGAGTGGaatataaaaatagaaacaatacTCTTGCACAGCGACGCAGAAAGAAAAGGCCCACCACTGGGGTGGCTGAGGAAACCGGAGTGATGGCAAGAGGCCCTGTGGATCGGTACGGATGTGTGAGGTGGTGTCCTGCAGAACTTCCTGCTGGTGAGACCGAGGCAACCTTAGATGAAATGAAAAGGCAGCTGCACAACATCTACTCAGAGGAAGGGATGGGCGGGGCAGGGAGAGCTGAAGCTTTGATGGAGAAGACATACGTCATCCAGCGGCGGTACCTCAACAGTTTGCCTGCACCTGCCATTTCAGACATTAAGGAAGAATggccttttcttttctctcagagAGGCCTTTACTCCCACTTTAGTCTGCTGACAGATATCTCCATCCTCATTAAGTTGCAAGAGGCCCTAAAAAACAGAGGCAGTACACTTATTTGGTTCAGCCAGGAACTCAAACGCCATCCAGAGATTGAGGACGTCCTGAATAATTTCGAGCCAGAGGCTTCAGACAAGGCTGCATGTATCCTCCTGCTCCTGTTGGCGTACTTTAAGGAGCCCAAGAGTGCCATCGTGCTTGAGACTGATGTAAGttgtgtaaaaaatatttttaaaaagcagtCTGTGTTTACACTAGATAGTATACATAACATTCTCTCTGATTACCCTCTGTCAGGAGACCAGTGAACTGTCTTTTATGTATTTGAATCCGTTTTTGCAAGCTATTCCAACTTTAATCTGCAGTATCCTGAGGACGGCTCATGTACTCTGGAGTTTATTCAAAGGTGCTTCTTGGGTATTAACCCTGAGATGGGCTCCAAATCGAAGAACAAACAGCTGAGTGGCATCAACCCACATGTGAGCACACTCGTGAGAAAACTTGTGGACTTTGAATGGATGTCGATGTAGATGTAAAGGATTAAAGTATAGGGACACCTGACCATTACACCAACAGGGACTTTAACATTCAGGGGCATTGCATTCCAAAGACATGCATTACATTACTGATGGCAAGCtctatatgtctctctctctatatatatatctctgtctctatatctctatctctctatgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107137 lncRNA upstream 2952 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA upstream 11964 40057013 ~ 40099469 (+) False G79957
TU107127 lncRNA upstream 12368 40030375 ~ 40099065 (+) True G79953
TU107113 lncRNA upstream 74272 40015559 ~ 40037161 (+) True G79944
TU107076 lncRNA upstream 192879 39861074 ~ 39918554 (+) True G79922
TU107142 lncRNA downstream 6347 40120170 ~ 40120511 (+) True G79960
TU107168 lncRNA downstream 108550 40222373 ~ 40255520 (+) True G79982
TU107174 lncRNA downstream 108759 40222582 ~ 40377864 (+) True G79985
TU107195 lncRNA downstream 165863 40279686 ~ 40280012 (+) True G79998
TU107199 lncRNA downstream 201609 40315432 ~ 40316591 (+) True G80002
XM_039806075.1 mRNA upstream 18173 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA upstream 18173 40083030 ~ 40093260 (+) False LOC120562361
XM_039806205.1 mRNA upstream 132068 39924325 ~ 39979365 (+) True LOC120562496
XM_039806074.1 mRNA upstream 282729 39811855 ~ 39828704 (+) True LOC120562359
XM_039806203.1 mRNA upstream 307546 39781236 ~ 39803887 (+) True LOC120562494
XM_039806078.1 mRNA downstream 25910 40139733 ~ 40152085 (+) True LOC120562363
XM_039806086.1 mRNA downstream 155125 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA downstream 164373 40278196 ~ 40281752 (+) True LOC120562377
XM_039806207.1 mRNA downstream 177159 40290982 ~ 40344206 (+) True LOC120562498
XM_039806208.1 mRNA downstream 264859 40378682 ~ 40441316 (+) True LOC120562499
TU107036 other upstream 342583 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 647592 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 657141 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 657141 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 790108 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 202916 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 220539 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 303255 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 306046 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 306156 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile