RNA id: XM_039806244.1


Basic Information

Item Value
RNA id XM_039806244.1
length 5316
RNA type mRNA
GC content 0.48
exon number 24
gene id gabbr1a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 29019647 ~ 29082136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGGGCCCAGACCTTAGCGCGTTTCATCTTGGGGTAGGAGGGAGATAAATGCGTGACAGAGGGACTGTTACGCACGGTGCGTCTCCATCATGACGTCGTGAATTAGCTCAAGATTGtagggggagagaaaaaaaggaggggAGTGTGGTGAAACGGTGTTTCGTCGTGTATGGGTATACGTTTGTATATAGTgcatgtatattttttgtatggATTTTGACATTTATTACCTTTGCCATGCGTAACTGCAATACATAGAAAAACGCCGAATAAgataggttttgtttttgtaacattCTGTTTACGAACGGAGCAGATTGCACATTTATAGCCATATTAATATAGCCATAAAATCGTTTTAAGATGAATATTTTTACCAAATAACCCGACATTGGGCTTTCCCTGGCGGATCCACCCCGGAGGACGTACTGCTATCCTGACTGAGCGCATCGAAACTAATAATCCAGAGATGGCACAACTATTCTTTCTGATTATTCTCTATGCTCTTCCATCTCTCGTTGCGCCCATACATAATTCATCAAGTGGAGgCTGCGCTATCATCCGGCCTCCCAGGGATGGGGGGATCCGCTACAGAGGCCTGACACAAGAACAGATCCGCAGTGTGCAGATCCTCCCTGTGGATTATGAGATAGAGTACATCTGCAGAGGAAACCGAGTGATCGTGGGACCCAAGGTCAGGAAGTGCTTACCCAACGGCACATGGACGGACATGACGCTGCACAGCACATGTTTGCTGCTGTGCCCGCGGGTGTGGACCTCCCTGGAGAATGGCCGGGTGATGGTAAAGCCCCCCGGGCCACCAGTGGAGGGGACAGTGCTCCATTACAGCTGCCATGCCGGCTTCATCCTGGAGGGCAGAAACATCAGCCATTGCACTAAACTGGGCAAGTGGGACGCGCCTAAACCCACCTGCCTCTAtgacagaaactacacagGCAAGAAGAAGCTGTACATCGGAGCGCTGTTCCCCATGAGCGGTGGCTGGCCCGGTGGTCAGGCGTGTATGCCCTCCGCCCAGATGGCCCTGGACCTGGTAAACAACAGGAGCGACATCCTGCCCGACTACGAACTGGAGCTCATCCACTACGACAGCATGTGTGACCCAGGAGAAGCCACCAAGTTGCTGTATGACCTTCTGTACACCGAGCCCATCAAGATCGTGCTGATGCCCGGCTGCAGCGGCGTCTCCACGTTGGTGGCCGAAGCTGCTCGCATGTGGAACCTCATAGTGCTGTCCTATGGCTCCAGCTCGCCGGCCCTGTCCAACCGCCAGCGCTTCCCCACCTTCTTCCGCACGCACCCGTCGGCCACCCTTCACAACCCCACCAGGGTGCAGCTCTTCCAGAAGTGGAAGTGGACCCGCATCGCCACCATCCAGCAGACTACTGAAGTCTTCACCTCAACTCTGGACGATCTGGAACAAAGGACGAAAGAGGCAGGCATTGAGATCAGCGTTCGCCAGAGTTTCCTCACCGACCCGGCTGTCGCTGTCAAGAACCTCAAGCGCCAAGATGCAAGGATCATTGTGGGGCTCTTTTATGAGACTGAAGCCAGGAAGGTGTTTTGTGAGGTGTTCAAGGAGAAGCTCTACGGGAAGAAGTATGTGTGGTTTCTTATAGGCTGGTACGCAGACAACTGGTTCAAGATCAAAGACCCAGCTATCAACTGTACAGTGGAGAACATGACGGAGGCCGTGGAAGGACACGTGACCACCGAGATCGTCATGCTGAATCCTGAGACGGTCCGCGGCGTCTCCAACATGACATCGCAGGAGTTTATTGCCGCCTTGATGTCTCGTCTGGGTGGGAAGAACCCTGAGGAGACCGGTGGGTTTCAGGAGGCCCCTCTTGCCTACGATGCAGTGTGGGCTCTGGCCCTTGCTCTCAATAAGACCGTGGCACCACTTAAGGCAAAGGGCCGACGACTGGAGGACTTCAACTACAACAACCACGACATCACCTCTGAGATCTACAGGGCCCTCAACACAAGCTCCTTTGAAGGTGTTTCGGGCCAAGTGGTGTTTGACGCCCAGGGTTCTAGGATGGCAATGACTCTTATCGAGCAACTGCAAGGAGGCAGTTACAAGAAGATCGGTTACTATGACAGCTCTCAGAAGAACCTCTCCTGGTTTGGCAATGATGTTTGGATAGGTGCTGGACCTCCGGCTGATCGGACAGTGGTGATCGAAGAGTACAGGTTCTTGTCTCAGAAGCTGTTTGCTGCTGTGTCCGTCTTCGCTGGCCTCGGCATCCTGTTTGGCATTGTCTGTCTAACCTTCAACATCTACAATGGCAACGTCCGCTACATCCAGAACTCTCAGCCATACTTGAACAACATGACAGCGGTGGGCTGCATGATGGCTCTGGCCGCAGTGTTTCCGCTGGGGATTGATGGTCACCACGTCCACAGATCTCAGTTCCCCGTCGTCTGCCAGttcCGCCTGTGGCTCCTGGGCCTCGGCTTCAGCCTGGCGTATGGCAGCATGTTCACCAAGATCTGGTGGGTCCACACACTCTTCACAAAGAAGGAcgaaaagaaggagaagaagaagCAACACTTGGAGCCATGGAAACTCTACGCAACAGTTGGAGTGCTGCTGGCTATCGACTTCCTGTCACTCATGATCTGGCAGATTGTGGATCCTCTGCACATTACGGTGGAGAAGTTCACTAAGGAAGCCCCTAAAGAAGATTTGGATGTCCTGATTCAGCCCTTGCTGGAGCACTGCAGCTCAGAGAAGATGAACACGTGGCTCGGTGTGGTTTATGGCTACAAGGGTCTCTTGCTACTGCTGGGAATATTTCTGGCTTACGAGACCAAGTCTGTCTCCACAGAAAAGATCAATGACCATCGGGCCGTGGGATGGCGCTATACATTACATAACATGGCGGTGTTGTGTCTGATCACGGCTCCAGTGACCATGATCCTGTCTTCGCAGCAGGATGCCTCCTTTGCCTTTGCCGCTCTAGCAGCCGTCTTCTCTGCCTACATCACTCTGGTCGTGCTTTTCGTACCCAAGATGCGGCGTCTCATCACCCGCGGTGAGTGGCAGTCGGAGCAGCAGGACACTCTGAAGACCGGCTCGTCCACCAACAACAACGACGAGGAGAAATCCCGGCagctggagagagagaacagggaGCTGCAAAAGATCATCCAGGAGAAAGAGGAGAGGGTATCGGCACTCCGCAACCAGCTGGCTGAGCGACAGGCTCTACGCAACCGCCGCCGACCCTCCTCAGGCCAGAATCAGAACCACAACACCCCGCCGCCCTCCTCCCAGCCGGATCCCAAGTCTCTGCTTCCCCCGCCCGGCTACCCCAACCCCACCACGGACAATCACGCCCTCCCGCCTTCCTTCTCCAACTCCTCCAACCTCTACCCGGCTGACAGCAAGATGAGCCGCAACCATTGTCACAACAGCCAGATCCCATTGCTGTATAAATAGGCGAGGCACTGGGAGAGGGGGaagggtgggtggggggtgggaacACTCGCAGAATGCACACAAACCGGGGACACACAAATCACAATGAGACACTGTGACTTTCACTTGTTTCGGCGATAAGCACAGCGGTGTTGTGACACTGTTTTAAAATATGGCGTGGAAGCACAAATAAGTACACAGGAGTGCTTTGCACTTGGCAGCTTCTGGGAGAGTCACGCAGGTAACACCCGTCCTCACAGTTTTGATCACACTGTGTTCAACCCAGCAACGAGGCACTTGTGACTGGTCAGACTAGCAGCACTCGAGGTCTTTTAAAAAGGTCAAGTGAACAGATAGCTCTCTTAATCATTCCTCTCCCTCATTTGTTATCTCGTTCTGTTGTGGAGGCACCGCATCAAGGATCTTAAAAGGAAACGTTTGTGCTTGTGTCTTTGCTATATCGTCTCCACCTTTTGTCTCTCGAGTTTGTTGACAATGTAGGCAAGCGCATACAGTAGTGATTTATATTGTTCTGTAATATCTGATATGTTTTGTCATGGAGTTGTGAattatttgtttactttttttttcaggagaGTTGTGAAAGCTGAAATGTACAAAGGGACAAAGCGATGTAAAGTTGTTTCCAATGTTTCCTCTAAAGAGATCGACTGTGTGGAACACTCGTTTCACTGAAAAGTGATAATGTGCATTAATAAATAGCCATAATTTAGAAGGGCCTTGGCATGTATGGATGTGTCTTGTCAGGACTGTGTATTCAAGTACAACACTGGATCTTGAAAATCCAGTCCTTTGCTGAATATTAGACCCATTTTAAAGGAGAAAATGATCAGAGTTTGCTCGTGTATAGGGACATTTTTGATAGTTTTGccatttaaaataatgtttcacaATGTATTTTTTGAGATTTGTGTTGTATCTATTTAGCTGTATAGTACAGTAGTAGCCATCAAATAAACCCCTCATCCTGCATCTTATGTATTTTGCAGATATCGCCAAATACTGCTGCAGCCATAGTAACTGCAGCTGATTCTCACTTTTAGAGAAAACTCCAACTTACAACTTGCCAGAAAAATAGTTTGTACTTTCTGCCTCCTGGAAATGAAAGCCAATGTATATTTCTACAGCAGCAGTGCGGTGAGATGTGGGGCTTCCACGATGGCAATTTCTGTAAATATTCAGAGAAAGCACAGTTTTTATACATGTGAATCTGTTATACGTCATTCTTGTaagccttttattttttattttgaaaggatgTTTTCTCTTATGTTTTCCCATAACAGACAATCTGGATGGATGctaatttttttctatttttctttcccATTTTGCCTTTTGGGTAAATTGTAAATGTATCAAAGAATGATATACGTAAAGTAAtgtgacatactgtatttattcAGCAGTTAATCTGGATGTACTATTTCATTCATGAGCTATTTCCAGATTTTATAAAGCAATGATACCTGAATGGCTTTATCAGCAGGTAAAACAATATTTATGTCAAATATTTTGTTAGTGTGCACTTTAAACTGAACGAACTATGGTTATTCCACTTTATGTTGCGGTTATCCTAATACAATTTAGCTCAGGGTATGGAGGAGGACATCAATGAATGAAATAGGCCATATTTATTAACTGTGCAGTACCTGGATCAGATATTGTAACATATGAATGCGGAAATAATTTAGGAAATGTTCTATTATCTTGCACATATATGACATTATACATGGATTTGTGGATATTTGTATTCACTATATCTAAAATcttaaatgttaatatatttCAGAGTATGTGTATGCAAATATATGGGtaccataaataaaaataattgttttttca

Function

GO: NA

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102854 lncRNA upstream 68123 28943905 ~ 28951524 (+) True LOC120563088
XR_005639909.1 lncRNA upstream 68631 28943910 ~ 28951016 (+) False LOC120563088
TU102850 lncRNA upstream 76921 28941062 ~ 28942726 (+) True G76885
TU102852 lncRNA upstream 79292 28939209 ~ 28940355 (+) True G76887
TU102819 lncRNA upstream 138459 28880973 ~ 28881188 (+) True G76859
TU102950 lncRNA downstream 44819 29126955 ~ 29127212 (+) True G76969
TU102966 lncRNA downstream 144261 29226397 ~ 29244092 (+) False pear1
TU102980 lncRNA downstream 204958 29287094 ~ 29288548 (+) False mex3a
TU102984 lncRNA downstream 214822 29296958 ~ 29302135 (+) True G76995
TU102994 lncRNA downstream 231963 29314099 ~ 29314625 (+) True G77004
XM_039806804.1 mRNA upstream 513 29008573 ~ 29019134 (+) True sh3bp5la
XM_039807051.1 mRNA upstream 11815 29004625 ~ 29007832 (+) True mgat1a
XM_039807052.1 mRNA upstream 14837 29002636 ~ 29004810 (+) True LOC120563046
XM_039804895.1 mRNA upstream 18980 28998228 ~ 29000667 (+) True rnf183
XM_039806150.1 mRNA upstream 22213 28981531 ~ 28997434 (+) True dhx16
XM_039805341.1 mRNA downstream 48173 29130309 ~ 29146536 (+) True bag6
XM_039805343.1 mRNA downstream 48173 29130309 ~ 29146536 (+) False bag6
XM_039805344.1 mRNA downstream 48173 29130309 ~ 29146536 (+) False bag6
XM_039805342.1 mRNA downstream 50184 29132320 ~ 29146625 (+) False bag6
XM_039805346.1 mRNA downstream 75533 29157669 ~ 29162290 (+) True LOC120561976
unassigned_transcript_354 other upstream 172864 28846712 ~ 28846783 (+) True trnaa-ugc_7
unassigned_transcript_353 other upstream 173181 28846395 ~ 28846466 (+) True trnag-ucc_8
XR_005639746.1 other upstream 185477 28800651 ~ 28834170 (+) False LOC120562342
TU102613 other upstream 449781 28553572 ~ 28569866 (+) True G76714
TU102606 other upstream 498025 28520699 ~ 28521622 (+) True G76707
TU103005 other downstream 246653 29328789 ~ 29330258 (+) True G77009
TU103024 other downstream 301999 29384135 ~ 29389892 (+) True LOC120562177
TU103032 other downstream 321872 29404008 ~ 29412413 (+) False G77028
TU103301 other downstream 1041566 30123702 ~ 30124638 (+) True G77239
TU103600 other downstream 2052693 31134829 ~ 31136146 (+) True G77447

Expression Profile