RNA id: XM_039806258.1


Basic Information

Item Value
RNA id XM_039806258.1
length 1973
RNA type mRNA
GC content 0.52
exon number 12
gene id pklr
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22674277 ~ 22687960 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggaaaaaatatagaagaattacaggataaaaaaataaaataaaccaatAGAGGAGGAGGAACTGCATTGTGAATTTGGATCTTATTAAAAATTGATAGTTTTATGAATATGGCTCGCATCAGGCGCTACTCCGAGTCGATGACACTGCCGGACTCTTTCATCCAACGCCAGCAGCTGGATGCCAGCATGGCTGACACCTTCCTGGAGCATCTCTGTCTGCTGAACATCGACCaggagccaatcacagcgcgcAACACCAGCATAATCTGCACCATTGGTCCTGCATCCCGATCGATCCCCAAACTCCACGAGATGGTCAAGGCAGGAATGAATATTGCTCGTCTAAATTTCTCTCATGGCTCACATGAATACCACGGTGAAACCATCAAAAACATCCGAGAAGCGGTGGAGACGATTACCTCTGATCCCTTGTATTATCGGCCGGTTGCCATCGCCTTGGATACGAAGGGTCCAGAGATTCGCACCGGATTAGTGAAAGGGaaagtggaggaggaggtggagctgGAAAAGGGCAGCCATGTCCGTGTGGTGACAGCAGAGAGTGACAAAGATAAAACAGACGGGAAGATTATCTGGGTGGACTACCCCAGCTTGCCCAAAGTCCTCAACAAGGGAAGCAAGATCTACATTGATGATGGCCTTATTGGACTCAAAGTACTAGAAACCGGACCTGACTGGGTGGATGCGGTGGTGGAGGCCGGTGGGCTGCTGTGCAGTCGTAAAGGCGTTAATCTCCCTGGCTGCGACCTCATCGGCCTGCAGGCAGTCAGTGAGCGAGACGAGGCCGACCTAAGGTTTGGCGTGGCCCAGGGTGTAGACATGGTGTTCGCCAGCTTCATCCGCTCTGCCCAGGATGTCAAAGATGTGCGGCGAGTTCTGGGGGCGCACGGACGAGACATCAAAGTGATCAGCAAGGTGGAAAGCCGACAAGGGGTTCAGAACTTTGAGGAGATCCTGGCTGAGAGCGACGGTGTGATGGTTGCCAGGGGCGACCTGGGGATCGAGATCCCAGCGGAGAAAGTCTTCATCGCACAGAAGATGATGATTGGACGCTGTAACTCTGCCGGCAAGCCCGTCATCTGTGCCACACAGATGCTTGAGAGCATGGTGGCCCATCCACGGCCAACCAGAGCGGAGAGCAGTGACGTGGCCAACGCCGTGCTGGATGGAGCTGACTGCGTAATGTTATCTGGGGAGACCGCCAAGGGACTGTTTCCTGTGGAGGCAGTCGCAATGATGCACTcaatCTGTAGGGAGGCAGAGGCGGCCATTTTCCACCAGCAGCTGTTTGAGGAGTTGCGTCGCCtcactcctctctcctctgaCCCCACAGAGGTCACAGCCATCGGAGCTGTAGAGTCCTCCTTCAAGTGCTGTGCAGGGGCCATCATAGTCCTCACCACCAGCGGCAGGGCGGCACATCTCCTGTCCAGGTACCGCCCTCGATGTCCTATTATTTCCATCACCAGAAGCCCTAAGGTGGCCCGTCAGTCTCAGCTGTTAAGAGGAGTGTTTCCTGTCCTCTTCCACCCTCTGCCTGCTCCCGTCTGGGCCGATGATGTAGACAACAGGGTCAACTTCGGCATGgacatagGGAAAGCAAGAGGATTCTTCAAGTCGGGCGACATGGTGATAGTCGTGACAGGCTGGATCCCAGGCTCTGGTCACACTAACATTATGAGGGCAGTCAATGTCCCATAACAACCTGACCTTCCCTGACTCTAAATCTGACTGACATGCTGACATATAAATGTGATGAGAACCACccctttaaataaaacaataaccaCCGCTACTTTTTAACAAAAGCGTTTTGGCAGCATCATCAGTGTTATTTAAACTCAAGGTTATGGTAGGAAAACACTGGAACTGTTCTCATGAATGTTGAATTTGTGTTTAGCGTGTCTTGAAAGAGATgactcccccccccaaaataaaaCGTTTAACACA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100051 lncRNA upstream 50650 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 364088 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 421125 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 430840 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 433570 22242817 ~ 22243033 (+) True G74764
TU100074 lncRNA downstream 16912 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 126084 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 230792 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 236632 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 294932 22982892 ~ 22987322 (+) True G75065
XM_039806261.1 mRNA upstream 2469 22667916 ~ 22674134 (+) True LOC120562535
XM_039806262.1 mRNA upstream 2469 22667917 ~ 22674134 (+) False LOC120562535
XM_039806263.1 mRNA upstream 8718 22661142 ~ 22667885 (+) True LOC120562537
XM_039804708.1 mRNA upstream 19505 22651638 ~ 22657098 (+) True clk2b
XM_039804824.1 mRNA upstream 25216 22643346 ~ 22651387 (+) False LOC120561656
XM_039806265.1 mRNA downstream 1110 22689070 ~ 22705416 (+) True LOC120562539
XM_039806268.1 mRNA downstream 22179 22710139 ~ 22732441 (+) False zbtb7b
XM_039806267.1 mRNA downstream 22180 22710140 ~ 22732441 (+) True zbtb7b
XM_039806266.1 mRNA downstream 23681 22711641 ~ 22732441 (+) False zbtb7b
XM_039806269.1 mRNA downstream 38252 22726212 ~ 22732441 (+) False zbtb7b
TU100065 other upstream 9059 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 53519 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 53519 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 91031 22559945 ~ 22585572 (+) True celf3b
XR_005639856.1 other upstream 187885 22469978 ~ 22488718 (+) False rprd2b
TU100082 other downstream 126084 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 212184 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 803165 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 1076355 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 1079225 23767185 ~ 23767467 (+) True LOC120563206

Expression Profile