RNA id: XM_039806261.1


Basic Information

Item Value
RNA id XM_039806261.1
length 2079
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC120562535
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22667916 ~ 22674134 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgttttctggatCAGCCTGACATTTGGGCTCTGTTATGATTCTCTTGAACTCTGATCCTCACATCCATTAATCATTGTCTGCTATCAGTTCATCAGAGCGATATAGAGCACACTCAAGGATTTGAGGTTGAGGATGAAGGAGGGAAATAATCGGTCCTGCAGAGACGACGAGCGGTGTCACAACTCTGGATGAGACTGGCCATCACATCTTGTCTGGACCATGAGGAGCATGTACATCccagtgactgtgtgtgtcagagcacAGGGCACTTGTGGGTCTAGTACTGGAGTAAGAAAGAGGGGTTTGGATGGACAAGTGCGGAGCTTTGAGGAGATCCCTCACACAGGGAGGAGCGGCTGGGTCAACTTGGTTAAGTTCTGGAGAGAAGATCGTTTCCGGCAGCTCCACAAGCACATGGAGAGGACCTTCAACGCCCTCGGCCCCATTTACAGggagCATGTGGGCACCCACAGCAGTGTGAACATCATGTTGCCGTCTGACATTGCGGAGCTGTTCCGCTCAGAGGGCCTGCACCCCCGACGGATGACCCTGCAGCCCTGGGCAACGCACCGAGAGACACGCCAGCTCAGCAAGGGAGTCTTCCTCAAGAACGGTGAGGAGTGGCGAGCTGACCGTCTACTGCTCAACAAGGAGGTGATGATGAGTGCGCCCGTGAAGCGCTTTCTCCCCCTGCTTGATGAGGTTGCAATGGATTTCTGTCAGATGCTGCGGGCCAGagtggagagggaggggagaggcgAGGAGGGGAAGCGCAGTCTGACTATGGATCCCAGTCCTGACCTCTTCCGCTTCGCACTGGAAGGTCTGAGGTCATCATCCCACACCAGTTGCCATGTAATCTACGGGGAGCGTATTGGCCTCTTCTCCTCATCTCCCTCAATGGAGTCCCAGAAGTTTATCTGGGCCGTGGAGCGAATGCTGGCAAcaacccctcctctcctctaccTGCCCCCTCGCCTGCTGCTCCGCATCGGCGCTCCCCTGTGGACCCAGCACGCCAGTGCATGGGACCACATCTGCAGCCACGCGGAGGCGAGGATCCAGAAGGGGTGCCAGCGTCTGTCTTCCTCCCAGGCTCAGGGGTCTGAGGCTGGAACAGCTGGAGGCCAGTACACCGGGGTTCTGGGCCAACTCATGGAGAAAGGGCAGCTATCCTTGGACCTCATCAAAGCCAACATCACTGAGTTGATGGCAGGAGGGGTCgacacgACAGCGGTGCCCCTCCAGTTTGCTCTGTTTGAGCTGGGCCGTAACCCAGAGGTGCAGGAGAGGGTGAGGCAGCAGGTGAGGATGTCGTGGGCACAGGCTGGTCGTGATCCTCAGAAAGCCCTGCAGGGGGCGCCATTACTGAAAGGCCTAATCAAGGAGATTCTTAGGTTATATCCGGTGGGAACTACAGTGCAGCGGTATCCGATCAAAGATATTGTTCTTCAGAATTACCACGTTCCTGCTGGGACGATGGTCCAGGCCTGTCTCTACCCCCTAGGAAGAAGCGCGGAAGTGTTTGAGGATCCACTGCGCTTTGACCCCGGCCGGTGgggcagcagcagagaggaagGCCAAAGAGGAGAGGGGCCAGGGGGGTTTCGCTCTCTGGCGTTTGGGTTTGGTGCGAGGCAGTGTGTCGGGAGGAGGATTGCTGAGAACGAGATGCAGCTCTTGCTCATGCATATCCTGCTGAGCTTCCATCTCAGCGTGTCCTCCTCAGAAGACATTAAAACCACATGCACCCTCATCCTCCAGCCCGAGACTCCGCCAAGGATCACTTTCAGgaaactctgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaagtgagTCATCAACATTTGGCATGTTTAATCACACAATTTAGCCTGTTTTAGTCTCCCAACATAACAACCATAAATGTCTGATGATACTCACTGAAGCTTATACTGAGCTTTTTTTGCATTCTCATAAACTGTACAACAACAAATTCAAGAATTCATAATGCTGATGAATAAAGTATACTTTCCTCC

Function

GO: NA

KEGG:

id description
K00497 CYP11B1; steroid 11beta-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100051 lncRNA upstream 41963 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 355401 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 412438 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 422153 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 424883 22242817 ~ 22243033 (+) True G74764
TU100074 lncRNA downstream 30738 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 139910 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 244618 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 250458 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 308758 22982892 ~ 22987322 (+) True G75065
XM_039806263.1 mRNA upstream 31 22661142 ~ 22667885 (+) True LOC120562537
XM_039804708.1 mRNA upstream 10818 22651638 ~ 22657098 (+) True clk2b
XM_039804823.1 mRNA upstream 16529 22643346 ~ 22651387 (+) True LOC120561656
XM_039804824.1 mRNA upstream 16529 22643346 ~ 22651387 (+) False LOC120561656
XM_039807304.1 mRNA upstream 24838 22629617 ~ 22643078 (+) False setdb1b
XM_039806259.1 mRNA downstream 143 22674277 ~ 22687960 (+) False pklr
XM_039806260.1 mRNA downstream 801 22674935 ~ 22687960 (+) True pklr
XM_039806258.1 mRNA downstream 2469 22676603 ~ 22687960 (+) False pklr
XM_039806265.1 mRNA downstream 14936 22689070 ~ 22705416 (+) True LOC120562539
XM_039806268.1 mRNA downstream 36005 22710139 ~ 22732441 (+) False zbtb7b
TU100065 other upstream 372 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 44832 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 44832 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 82344 22559945 ~ 22585572 (+) True celf3b
XR_005639857.1 other upstream 177972 22469978 ~ 22489944 (+) False rprd2b
TU100082 other downstream 139910 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 226010 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 816991 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 1090181 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 1093051 23767185 ~ 23767467 (+) True LOC120563206

Expression Profile