RNA id: XM_039806268.1


Basic Information

Item Value
RNA id XM_039806268.1
length 4820
RNA type mRNA
GC content 0.48
exon number 4
gene id zbtb7b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22710139 ~ 22732441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACAGCGACAGACACCGCTTCTGGCCTATCGCATCAGAGTCGGACCCCCTccgtcctctctctccctccctcactaCCTCCCTCCCCTGTGCCCTGCCCACCCCGGCGGTCTCTTCTCCAGCCCTGCCAGAGCCAATCCGCGACTGGGTGTAAGTAGGGCAAGCCGCTTCCTGGTTCTCAGAAAGAAGGAGCTGGAGTCGGAGTGGGCCAGCGGAGGCAGCACACAGGGGGTCAGAGCAGCCCAGAGAGCCGGCGGTCTGCACAGACAAGAGACGAGAGGACCAACAAGAAAAACGCCGACGTACAATTTGGCGAGGATTAAAACCTCCCGGGTGTCGATCTGAGGACGAAAGCAGCGGTGACCCCCCCCCGGTGGAGAAGAAAAGACAAGAGCTGTGAGGatagaaacaaaaaataataagaaaaagaagTAGGCTAGGCAGGGTGGGACGGAATAATCCAGGAAGTGTGGAGGACGGTCAGGTGGGAGGCGACGAGTCTAAACAGGTGTATGACCTCTGCTGATCTCCGGGCAAAGGACCAAAGAGGAGGGGGACGAGTGAGAGGCCGAAGAAAGCAGGCACCCATCTTCTCCTGGGTTTATGGACCGGAGGTGGCAATGTCTCCAGGAGAGGACGGTCTGATTGGGATCCCCTTCCCGGAGCACAGCAACGAGCTCTTGTCCCACCTAAATGACCAGAGGAGGACAGGACTACTCTGTGACCTCACTCTGACGTCCCGCGGGGCACGCTACCCAACTCATCGCTCTGTCATGGCCGCTGTCAGTCTCTACTTCCGCCGGCTATTTGGGGCAGAGGAGGGGGGCGGCGAGGGCGGAGGAGGTTTCAGCGTGTGCCAGCTGGACTGTGTGGCCCCCGACGCTCTGGACGCCCTGCTGGAGTTTGCCTACACTGCCACCCTGACCATCCCCAGCTCTGGGATGAGAGATGTGCTGCGAGGGGCTCAGCTTCTGGGCATCCAGTGTGTGGCTGACGCGTGCAGAGACATCCTGGGGGAGACGGCTCAGGCGGAGGGGGAGACGGCAGAGGAACAGAGAGCCCAACACACAGCTACTGAGAGGATGGCGAGGGGAGAGAGCAGGGTGGAGAGAGGGTCCCGAAGAAAAACGGACAAAAAGAAGGTGAAAAAAGTTGGTTCACATCACTTCAACTCCTCGGTTTTGAACCCACCACCTGCTTCTCCCGTCTCGCACCCTTCACCTGCATCCGACAGCCTTCGCTCCCTGCCGTCTACCCAGCCTCCGAGCCCTGAACAGGAGGAGCTTCGCCTCAAATCCAGGCAAAACGGAGATTCCAGTGCGATCAGAAAGCCAGGTAGAGGGGCCACACTAAATGGAGGGCTTTTTCACTGGCTGCATGAGCGCCCCCATATAGCCCATCCTCCTCCTGTCCCGCCCTTGAACGACAAGCTGTCAGAGGATGAGGACATGGAGGGTTTTGGCGACGATGGTATGCTGATGGAAAGCACCTCCTTACCTACCTCTGTAGCTGATCAAAGAGCGGCGGCATCAGCAGCGGGAggtgggaggaagaggaagtctCAGACGCCCCAGCAGTGCCCTGTTTGTCAGAAGATCATCCATGGAGCAGGAAAACTGCCCCGACACATGAGGacacacactggagagaagccctTCCAATGCTCTGCTTGCGGAGTCCGTTTCACCCGgaATGATAAGTTGAAGATCCACATGAGGAAACACACTGGTGAGCGTCCTTACCCCTGCCCGCACTGCCCTGCCCGGTTTCTCCACTCATACGACCTCAAAAACCACCTGTCCCTCCACAGTGGGGCGAGGCCCTTCGAATGCCCGCTCTGCCACAAGGCCTTTGCCCGAGAGGACCACCTCCAGCGTCACCGCAAGGGAGACAGCTGCCTGGAGCTGCGCACACGCCGGCCCAGACGTGGGGCTGAGCTTGGGGAGGATGGGAGTGAGGAAGGAGGCGGGAGAGAGCAGTCCAACCCTCTGGAGGCTCTGTCTTTACAGGCCCACTCCTCGGCGTTTCTCCCTCGCACGATGCTAGATGGCGGGAGTGGATCCGGTGTCGGCCCCCCGCTGATGTTTCCAGTTGACGAGAGGGAGCGGTCTCTCGCCCTTCAGGCTTTGGCTCAACTTGGGCCTCACAGGCTGGCGGGCTACCCTGAGCTCTTCCTGCGAGGTCTGGAGCTGCGAGGGGGCAAAGAGGCAGAGGGAGAAGATCCAGGAGGAACCCACTCGCCGGCTGCGCAGCAGGACCGATGGGCTGACGAAGTTGAAGAGGAAATTGGAGAAGAAGAagcggaggaggaggaataGTGAAAagagggttgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacctgtgcgtgtctgtgtggtaAAGCatccacagtaaaaaaaaatctcactcAGGTGGCTGGACTAATGACCTTCTGCTCCAATATAGAGAgcgcttaaaaaaataaaaaacaactaaatgttattaaaagaaaaaaaaatggaaaacggGTTTTCTtagatattttaaatgtttgtctTCTGGCCCTTTGCATTTTGATTTCATTTGtctttttagattttatttctCGTTTGCTGTTTAATTTTATGTATTTCAGGTTTGAGCTGTTTGGTTTGATTTTTCTAGCTGGACATGCGTGTGTTGCGTGTGTGGTAACTGGGATGCTTTTCACTATGCAAACTAAAATCCGGAGCTGCGACATGAAGGGATCTTTAAAGAAGTTTATTTTAGTTACAACACAAATGTATTGATGCAGGTGCAATTCAAAAGTCATAGCTCCTAGATCACAAGAATGAGTTTGTGTGCCCGCTGTCCTCTGGTGGTTATCATTAGAAAGGCAGTGCAATTAATCAAACTAATTCTGTACATTGTCAGCAATAATGTTCGTTGTGTCTTTTCTTGTTAGTGGTAATCTTTGCTTTGACTTGGTGCTTAAACCAAAGATTTTTAGTTCAACTGTTTTCTTAAGTCTTAAGttaacaggagaggagagaggtgaATTGTAGCCAATGTTGGGTTTAAAGAGAAGACTCTTCCCAACTGTTTTGATAGCCATGAGAAAGAATCTGCTTCCATGTTTGAGTGTTTCAGAGCCGTAGAGCTCTGTGTTAAATGCCTGACCAAAATAGACAAAGTCTGGGTCAATGAGTTCCTGTTGATTATGTTGAAGACATATCTTCCTTTCCCAAAGGCTGTGGATTATCAATGCACTCATTTGGGTTCCTTGTTTGAAAAGAAATATGGAAAAGGGGCAAAAAAAAGTGAGGGGATGAAAGAGTTGGCATTCCCCCTTTTctgtacttatttatttattgttatttattatggTTCTTCTGCTGAAACTCTTTTATAAGACCAAATCCAAGGGTGGGACACAGATCACAAGTCTTAGAAAAAGCTGCATTGCGATAAAGATTTTGACTCAACATTTCCATATAAGTTAACGCCTTTTTTATGGGCTGTGTGTCTTCTTTTGACGATTCTTCCTCAAATGCATTCTTTGCACATTTAACCCTGTCAGGTACTGCAATAATACAGGCACATTCCATCCTCCAGGATAGAGAGAAGGGAACAGAGCAAAGAAGAAGTCAGGGGGTTTAAAACCTTCGATGAAACTGGAACACAAAATGACTTGTTGTTTGACATGTTCAGCATGCTTTTCTGTTGTTAATTTAACATGTATAGTAGTGTAACACATGTTAACATGGCAGTTCTACAGATCGGCCACTGCTGTTCTAAAGGGGCCATTATCATTTGAGTTAATCTATCTTCAACCAAAAACCTTTTTAGTTTGCATCATGCTTTCCCTGGACCAGTACATTAAGGCCTTTTGCAGGGTGTAATGCaatcattaatggttttaaaCGGTTAAGCAGTTGTCTTTTTATTTCCAAATCTCTTGAAAACCATGTCGTCAGAACCTGCTGTAGCAGTCATGCTGGTCTGACTCTGTGTGCACTATCCGTTCCTTGTTGTGTagtaaacctttttttaaatttccagTTTATTTGCACTATGAGATTTGAGAGCTTCAAGCCTTTTTGTCTGACCTTCAATATCTAGTCTATTAACTCTCTCAATTCCATTTAAGATTGTGATTGAAATACTTCTTTAAAACCTGCATACATAGAATAATCTTCCTCGTGCATAATAGTACAGAGTTATAgtcaatatattatatattgggATGAAGTTgccttagatttttttttttgagctgcAACTACTCTCAGGAAATCTTGAGCAATGCACTAAGTGATTATACACAATATAAAATGGGAAGAATGGTTTGGTGCTGTCGGGTGATTGACACTCTTCATGTAAGCGTAAGGCCAgtagtttcaaaataagagATTTTGTATGATTTGATGATTGAAAACCAAATTAATTAAACCTATTATGAGATTAAAAAATAGGGAAATAATAGGTATGATAGTAAACTCCTGGCCTTACTGGAACCAGTCCTACTGGAATGGCAGTATGACAGTTGGTACTATCCGTGAAGGGTGTTTGTGCTCCCAGTCGGAgctttgtgaatgaatgaggGTTAACTGATGCCAGCTGTgaagtgtgtgtttctttgtgagCTGTTTGTTTTCTTGGCTTCGGTGAGGGGACATGGGGTCTGGTCTGTGTAGAGACCCCGCTATCAGGGATACATTTTTGTCTTTCAGTTTTTAGTGGAACCTTTTCAGAGGTATGAATTAATTTTCCCATCATTTGTTTCaataaatgtaaagaaaataaataaacatatctcAGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100074 lncRNA upstream 4836 22704872 ~ 22705303 (+) False LOC120562539
TU100051 lncRNA upstream 84186 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 397624 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 454661 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 464376 22245489 ~ 22245763 (+) True G74765
TU100087 lncRNA downstream 81603 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 186311 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 192151 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 250451 22982892 ~ 22987322 (+) True G75065
TU100410 lncRNA downstream 261979 22994420 ~ 22994706 (+) True G75069
XM_039806265.1 mRNA upstream 4723 22689070 ~ 22705416 (+) True LOC120562539
XM_039806259.1 mRNA upstream 22179 22674277 ~ 22687960 (+) False pklr
XM_039806260.1 mRNA upstream 22179 22674935 ~ 22687960 (+) True pklr
XM_039806258.1 mRNA upstream 22179 22676603 ~ 22687960 (+) False pklr
XM_039806261.1 mRNA upstream 36005 22667916 ~ 22674134 (+) True LOC120562535
XM_039806273.1 mRNA downstream 886 22733327 ~ 22740710 (+) True LOC120562542
XM_039806276.1 mRNA downstream 34686 22767127 ~ 22784419 (+) False kcnj14
XM_039806277.1 mRNA downstream 34686 22767127 ~ 22784419 (+) True kcnj14
XM_039806279.1 mRNA downstream 34686 22767127 ~ 22784419 (+) False kcnj14
XM_039805746.1 mRNA downstream 53137 22785578 ~ 22816354 (+) False myh14
TU100065 other upstream 42595 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 87055 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 87055 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 124567 22559945 ~ 22585572 (+) True celf3b
XR_005639856.1 other upstream 221421 22469978 ~ 22488718 (+) False rprd2b
TU100082 other downstream 81603 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 167703 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 758684 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 1031874 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 1034744 23767185 ~ 23767467 (+) True LOC120563206

Expression Profile