RNA id: XM_039806280.1


Basic Information

Item Value
RNA id XM_039806280.1
length 2818
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120562546
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28472676 ~ 28482599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAGCTGAGTGTGCCACCCAGACAGGCCACCAGTCTGACATGATTCAGTTGCTGGATTATAACCACTGTGCCTTGAATGCTGGTTAAACCTTTATTTGCTTCTTTATCAATTTCTAAAACATTTAATCAGAACAAAAGGACATTGTATGCTGAAAATTGTTGGCTCTTAAGGATCAACAACCTCACAGAAAAGAATGACAGGGGCTGTAAAGGTTTTCTTCATATGCTGTCTACTTCAAGGTAGCTTATGCCAACAGTGGGCAGCCTTGATGCCTCAGACAGTCGAGGGACTAAGTGGATCCTGTGTGATGGTCCCCTGCACGTTCAGCTTGCTCTCCGCCTGGGATAACCACCTGGATGATTCATGTAAAGCCATTTGGAAGAGAGGCTGGAGTCGAACGCAGGTGTTTGATTCCAGCCTCACTGGGGAACATGCAAGCTCAAACATCCTGCAAGGAAACCTAACGGGGATCCTGCGTGAGAAGGACTGCACCATCATTTTCAACAACCTGCCATCGGACCATTACGACAGCTATTACTTCAGACTGCAGTGTGACAATGATCTGAAGTTCAACTTTCCAACGGGCGTCCTTATCACCACTCGAAATTCCCTGCACAAACCCACCATAACTCCATCCAGGCTGGAGGTAGAAGAAGGGACTCCAGTGAGGTTGAACTGCACGGCAGTAGCTCCCTGTCCCATTCTCCCTCCAGCACTGACTTGGAAACCTAGTATTGGTGACATTGAGGAAAACATAGAAACTAAATTCATGACCTCTGTGTTAAACTTCACCGCTTCTTACCTCCACAACGGACAGAAGTTCTCGTGCGCCGCTCTCTACAACCGTCAAGCTGGCAACAGTGACCTTCTGTATGAAAAAAGTTTGACCCTCCGTGTTCTTTACCCTCCAAATAACACATCAGTCAGCTATTCTGGTCCTGTAAAAGAGGGTGGCTGGGTGACTCTGACCTGCAACGCCAATGCAAATCCAGCTGTGGACAGCTACACCTGGTACAAAGTGGATGGAGATCAGGTGACAGCAGTGGGTTCGAAAAACCGACTTTCGACTACGGTCTCAGAAGTGGACAGCAGATTTTACTGCAAAGTCAGTAACGGATATGGAACCCAGAACTCATCCATCACTCAGATAGACGTACAATTTCCTCCCAAGGAAACCACAGTAATCATCGACCCTAATGATCCAATACTGGAGGGCAGCTCTGTTTCTCTGCTCTGTAAGAGCCGTGCCAACCCACCTGTGACCAACTACACCTGGTACAAAGACGACAAAGAGGTTATGGAGCCTGGATCGAGCTTGGTTATGATCGGTGTAGACCCAAGCCACAGCGGTGACTACCACTGTTCAGCAAAAAGTGAGCTGGGAGAGGACGTTTCAGCGCAGATTCAGCTGGACATTCAGTATCCCCCTCAGAACACAACAGTGTCAGTTGACCCTTCTGGTCCGGTGCTGGATGGCAGCTCTGTCACTCTGACCTGCTCAAGCATCGCCAATCCAGCCGCAATAAACATCACCTGGATCAGAGTGGCTGGAGGACAAAAGGAGGTGATGGGCTCTGAGAAAGACTTCACCTTCAATGTGACCAAACTCTCAGAGGATCAGTATTACTGTGAAGCTCTGAATGTCCACGGAGCTGAATACTCAGAGCCTGCCAGTATTGATGTCACATTTGCTCCAGAGATCCTTCCTTCTTCCCGCTGCGTCAAGATTTTATCCCTGATCCGATGTTCCTGCGACAGCCAGGGGAACCCGCGTCCCTCCCTGGTTTGGGAATTGGCCGGGGAGCCTGTCAATCACTCTGCTGCCATCCCGATCAGGGAAGTTCCCCTGGGGAGCGTGAGCATGAGGAGCCTCATCACCCTGTACCATTTGGATGATGACATGCCCTCTGTAGTCTGCCTCAGCATCAACTCGCTGGGCTCTGATAGTTTTGCATTCAACGTGTCCTCAAGTGAAACTCAGCTAGGCCTCCACACTTTTTCTCTTTTGATTGGCTCTGCAGTAGGCGCACTGGGGATGCTGCTGGTATGTGTCCcgctgctgcttttgttttgcaGGAAAAGGAAAGGCAGTCTTACACCCAACAAGGGATTGGTGGACTCTTCTGACTTTTTAGCTACTAATGGGACTCACTCTTCCAAAGTGGATGTGATTTACGCCAATAAAACCATTAtggaagaggaaggagaagtTAAGGAAGACTCTCTTAACTACGCCAATGTGGACTTTGCTAAACTCCAGGCCAAATCAGAGGGTACGCTTGTTGAAGGGGAGATCAGAGGCCTGGACTCCAAGACGACTGAGTATACTGAGATCTGTCTGCACTCCAGAGAAGGCAATGGAGAGGACGTGAAGGAAGAAGAGACAGTTGCTGACACTCATGGTCTCATAGGACAATGAAAAGTTTATGGCTCAACTTTGGAGGAAATTAAACAGGATTCTGGGCTTCAAACGGCTACAGGACTTTACCATATCCAACTTCAGTTTTCCACACTCAGCTGAGCTAAAAAAATTCTGCAGCACATTTGTCAATGTAACATGTTCTTGTGTGTCTTTACTGAAAagtgcatataaaaaaaaattacaataaaaatgattttgaaTACATATACTAGGTACTTCACCACAATAGACCATAACAGTAAACATTCCCTTTAAACTGATGAACTTTTTTATAGATGAATGCTGTCGCACTTACATTTAATATTTCAATGCAACGTTTGTCTTACACTTttgttaattttattgtttgaaACCTTTGTTCATAGGGAAATAAACAGTTACAGTTTGtcacaca

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639910.1 lncRNA upstream 34316 28437215 ~ 28438360 (+) True LOC120563095
TU102556 lncRNA upstream 34629 28437315 ~ 28438047 (+) False LOC120563095
TU102549 lncRNA upstream 55921 28416189 ~ 28416755 (+) True LOC120562434
TU102543 lncRNA upstream 57023 28414930 ~ 28415653 (+) False drd2l
XR_005639885.1 lncRNA upstream 125884 28331919 ~ 28346792 (+) True LOC120562953
TU102604 lncRNA downstream 51444 28534043 ~ 28534766 (+) True G76705
TU102608 lncRNA downstream 59999 28542598 ~ 28542841 (+) True G76709
TU102609 lncRNA downstream 62206 28544805 ~ 28545095 (+) True G76710
TU102611 lncRNA downstream 67509 28550108 ~ 28550378 (+) True G76712
TU102617 lncRNA downstream 78945 28561544 ~ 28572251 (+) True G76717
XM_039807064.1 mRNA upstream 1596 28441151 ~ 28471080 (+) True phldb3
XM_039807188.1 mRNA upstream 35742 28432322 ~ 28436934 (+) True ethe1
XM_039804943.1 mRNA upstream 41248 28419841 ~ 28431428 (+) True LOC120561728
XM_039806147.1 mRNA upstream 56183 28414518 ~ 28416493 (+) False LOC120562434
XM_039807359.1 mRNA upstream 57087 28395845 ~ 28415589 (+) True drd2l
XM_039806993.1 mRNA downstream 167694 28650293 ~ 28657142 (+) True zmp:0000000881
XM_039804942.1 mRNA downstream 217301 28699900 ~ 28705326 (+) True LOC120561727
XM_039806064.1 mRNA downstream 228038 28710637 ~ 28728274 (+) True scn1ba
XM_039806063.1 mRNA downstream 228038 28710637 ~ 28728274 (+) False scn1ba
XM_039806065.1 mRNA downstream 284396 28766995 ~ 28773597 (+) True si:ch211-225p5.8
TU102473 other upstream 185632 28283276 ~ 28287044 (+) False lim2.5
TU102453 other upstream 227515 28241783 ~ 28245161 (+) True G76581
TU102349 other upstream 520096 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 1184219 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 1586130 26883450 ~ 26886546 (+) True G76355
TU102606 other downstream 38100 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 70973 28553572 ~ 28569866 (+) True G76714
XR_005639746.1 other downstream 318052 28800651 ~ 28834170 (+) False LOC120562342
unassigned_transcript_353 other downstream 363796 28846395 ~ 28846466 (+) True trnag-ucc_8
unassigned_transcript_354 other downstream 364113 28846712 ~ 28846783 (+) True trnaa-ugc_7

Expression Profile