RNA id: XM_039806311.1


Basic Information

Item Value
RNA id XM_039806311.1
length 3476
RNA type mRNA
GC content 0.53
exon number 9
gene id fam171a1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21361594 ~ 21387306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCGCAGATATTAGCAGTGCTGCGTATGGAAGAAGCCGCCTGTTGGTGCTGTTTTGGGGCATGTGGCTCAGAGGATTGGTGGGGCCGTCTTCCTCTCTGACCCGTCGATTAAAAAAAACCGACCGAGCGGCACAAGGGCCGGGGATGCACAGAGGAAACACGGCTTTAAAGGCAAAAAACAGGAATGCTGATGCTGCGAAACATGGAGTTTTGCCTCCTTTGCGCAATAAACCGAGTTTACGCTGATGTGGCTGGTCAGTgagtttttaaaaagcaaacGATTTGGCTtctactttatttttatttaaccgtTGATACACATCTGCAATGATGTGGGCTGTGAATTGGAGACAAGCTGCTGCAATTTTAGTCTGCCTTTTGGGATACCTTGTCAACAGAGCTGTCGCCaaaacgttaccggaggacacAGTCACACAAGAGGTGACTCTGAAGGTTCACCTGAGCGATGCCAGCACTCACCAGCCCTTGGGAGGAGCCACCATACAGCTCTTCGCCAACCAGACTTCTGTAACCACGGAAACCTCATCACCTGATGGCAACACCTACTTGCGCTTCCCCTACCGCCTTGGGACACCGTTGGTCGTCACCGCATCCAAACAGGGATATGTGCCAAACTCTGTGCCCTGGAGTCCCTCCAGATTACCtgTATTTTCCTCGATCAGCCTGGACCTGCTACCAGAAAGAGCTGCTACTCTGATGGTGTATGAAGATGTTGTGGAGATTGTTTCAGGCTTACaagGTTTCAGGCATCAGCCCAGTGTTTATTTCCAGCGTAGAGCTCTGAGTCTTCCCTCCAACACATCCTACGCCAACCTTACAGCTCTGCTCACCGTGGCCAGTTCCCCCTCGCATATCCAGCACTTTCCCCACCTGCAGGTCCTCAGCGGCAACGGCACAGGGACAGAGAAGGGATTTGAGTTGACTCCTGTAGTGGCCATCTCTGTTCACTTATTGGCCAGCGACGGAGTGGAGCTGCAGGTGACTGGGCCAATCACGGTCTCCATCCCCCTGCCGGCTGACAGTGGCCTGAAGGAAAATGATCACATCCCTGCTTGGAGATTTGACCCACACTTGGgttCCTGGATAAAGAGCAGTTGGGGTCACGTGCAGCGGGAGGGCAACCAGCTCACTTTGACCTACATCGCTCCCCAGCTGGGATATTGGGTGGCCGCCATGTCCCCACTACACTCAGGTCCAGTGTTTGCGAAGGACTTCAGCACATACCACACTGTGTTCCTGTTGGCTATACTGGGAGGCATGGCTCTCATCCTGCTCTGCCTACTCTGCCTCTTGTTGTACTACTGCAGACGTCGTTGTTTGAAGCCTCGAGTGTCTCACCGCAAGCTCACACTGTCCTCTGGTCTGGACGGCAGTAAGAGGGACCAAGCCACCTCCATGTCCCATCTGAACCTCATCAGCAATGAGGTGCAGCTGGAACTTGTTTCCACAGCGACTGAGCCCGACATGACCACGCCAATGTTGAAGCCTTCTTCATATGAGCTCCAAGACAATCATCGTCAACACAGCCTAATCCATCACAGCAAACACAGCCGCTCCTCGCTCGGCAACAACAGCCACCACGGCTCATCTCTCGGCAATCTGACGCCTCGCAGCAGAGACTACCGGCAGTCTGTGGAGACGTTCCAATTAAAGGCTGCCCTTTCAGGCGGAACAGACAGAGGCTACCGTCAATCATATACCTCCGTCTGCTCATCCAGCAACCCGATTTCAGATGCACTGTCATCAACCAATCACGGAAAGGTGTTGGCTAATCAGATGAGCAGTGTCAGCATTGTTGATTGCAtctccccttcctctcctcctcactcCCCCAGTAGAGGGGAGGGATGTGAGTGCAGAGCTCCTGACTACCTTCTGTCCCGCTCTGTGGACCACCTGGAGCGTCCCAGCCCCCCCTTGCTCTCCCGGCCGGGCCAGCTGCTCTGCTGCGGCTCTGTGGACCTGCTGAGTGGAGGAGAAGGCTACCCGAGAGTGCGTCCTACACTGGTGATCCCAGCGCACTACATGCGTCTGCCTGGGGAGCACCCTCTGTCTGGTCAGGCCCTCCTGCTGCAGACTGACCAGCAGAGTGACTTGGAGACCATCCAGGCTGAGCTCAATGCCTCACATTCCCAGCAGCCCCTTGGGCAAACCCCCACTGACTGCACCCCACGTCCAACCAAGCAGGGGGACGGAGAAAGGCATGGCCTGTCAGAGTCTCTGTCTATCCCAGCAGCGCTTGGGGAAACGGGTCTAGTGGAAATAAACAGTGAGGACACCTTGTTGGCTGAAAAGACTTTAATGGAGCTCAGAGGAGGGAAGCCTCTGCCTCACCCACGAGCCTGGTTTGTCTCACTTGATGGACGCTCCAACGCTCATATTCGCCACTCCTACATTGATCTCCAGCGGGCAGGGTGCCACAGCAACGCGCCAGGTGGAGGAGGTCAGCAAGGAAATGTCAACGGTGGGAGGCGTGGCAACGATGCCAGTCTGGACTCTGGTGTGGACCTGAACGAACTGAGAGTGGGTCGCAGGGGGAGAGACGGAGGACGGGAGGAAAGAGATATTGAGAAAAACAGGGCAAAGGGGACCGCACCAGCCATGGCCTACACTCAGCTGGTGTATGTGGATGATCTGGACGGGGGAGGCAGCGAGGAGGAGATGCCCAAATGCAGCCCACAGGACAGTAAAACAGGACCCATCTTGTCAGACAAAGCTGAGGGTCAGAGAGGGGATCAGGGACAGGGGGatgtggaggagaaaagagtAGAGGAAGTACAAATACAAGAAGAACCACCCTCACTTTCCTCTTCATCCCctgcttctcctcctcccctgccaaCACCAGAGGAAGAGACGTTCAGGACTGATCATGCACTTCTGTCAGTCTCTCCGGATGACGATGCAGCACACgaggatggagaggaggaggaggaggaaaagaagagTCCTtggcagaagagagaggagcGACCCCTGCTGGCTTTGAACCTGAAATGATCCACAGAGGACCACttaaaggataggttcacaTCTTTCCTTAATAGAATACTCACATGCCCATATGTATATTGAAAGCGTTTTTGGTTGCTGTAATTGTTCCTCCTGTATATACTGGACCTTCTTAAAGCGATTTCAATTTGAGTTATGggggacaaaatccacagtcctcGTTGAATGCTAAAATTTAGGCTTGGAGCCTGAGAATCCTCAGGTTTTAAGTTTTTTTCAGTATTGAAGTAATCCAGTGATAATTGTCTGTACATGCATGGATACACTGCAAATGTTCAGAATGAGAACCCTGTCTCTTACATTAAAATCACTTTAGGAAGGGATATTGTTGCTGTTAGTGTAGACAGCAGGAACAAGTAACTGTTCAGTTGTACGAATGGGAACATCAGTTTTGTTTCGACATAGACTTGAAAAAATTTGAACTTATCCTTTTAATCATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 25901 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 69214 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 71280 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 72219 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 118027 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 337642 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 648972 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 696376 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 703314 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 728310 22115616 ~ 22116026 (+) True G74729
XM_039807317.1 mRNA upstream 24929 21331412 ~ 21336665 (+) False LOC120563169
XM_039807319.1 mRNA upstream 24929 21331433 ~ 21336665 (+) False LOC120563169
XM_039807316.1 mRNA upstream 24929 21331681 ~ 21336665 (+) True LOC120563169
XM_039804873.1 mRNA upstream 32147 21315070 ~ 21329447 (+) False l3mbtl1b
XM_039807288.1 mRNA downstream 2583 21389889 ~ 21396526 (+) True nmt2
XM_039805140.1 mRNA downstream 15729 21403035 ~ 21415877 (+) True crot
XM_039805139.1 mRNA downstream 15760 21403066 ~ 21404842 (+) False crot
XM_039805137.1 mRNA downstream 18177 21405483 ~ 21412888 (+) False crot
XM_039805138.1 mRNA downstream 18177 21405483 ~ 21411088 (+) False crot
TU99269 other upstream 350223 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1712083 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2202599 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 2202599 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2614919 18744662 ~ 18746675 (+) True LOC120562824
TU99513 other downstream 15821 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 211749 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 382242 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 745272 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 750259 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile