RNA id: XM_039806352.1


Basic Information

Item Value
RNA id XM_039806352.1
length 3567
RNA type mRNA
GC content 0.52
exon number 2
gene id pomgnt2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8364356 ~ 8384620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGGCGGTAGGCGGAGACTGGAGCCTACCAGCAGCCAGCAGAGTGGACGGTATCCAGCGGCagctgctccgtctctctcgtttatatactgtctatggtctctCTGCCGGTTCGCAGCTAGACTATTAGCCCGTCCCCGGAAACAGCAGCACCGAGAGGAGCTGCGCCGCGCCGACGGGAGGCGAGAGAGGAGCCGCGCCGAGAAGAGCCGCCGCCGCTGGTGCCCTGCCAGTCTCGGCTCTGCTCTGCTGTTGTGTCCCGCTGCATGGCTTGTGTTGCCCGCCGCTCAGCACCGTCCGTGGAGCTGCAGGAGGAGAGCTAACGCTAGCGCCGACCCAACCTGTCTGCTGCGAGGCAACGTTTCACCGAAGAGCCACGGTGTTGCCTGGCGGCGGATGTCTCGTCGCCTCCCTCTGAGGTCGGAGGCCAGCGGGAGCGGAGAGGAGGCTCGGCGGCAGCAGTGATGCGGACTACAGCGGCCGGCTGCAGGATGAGCGTGGGCGCGCTTCTCAACGGGCTGCTGGTCTCCGTCGTCGCAGCTCTGCTTTGGAAGTATTCCAAGCTGAGTGAGCACGCCGCCCTGCTGGAGGAAGAGCTGCACATGACACGGCAGTCCCAGGAGCTTTCGCAGGCCCACATCGACTACCACGTCGCCCTGCAGGCTCTTCAGGAGCACGGCACCCGCATGGTCTGCACCGGCAAGATGCACACCGACCGCATCTGCCGCTTCGACTACCTCTGCTACTGCTCGGAGGCAGAGGAGTTTGTGTTCTTCCACTCCAACTCCTCGGTCATGTTGCCCAACCTGGGGTCGAGGCGCTTCCAACCTGCCCTGCTGGACCTGTCCTCTGTAGAGGATCACAACACCCAGTACTTTAACTTTTTAGAGCTCCCAGTGGCTGCTTTGAAGTTCATGCCCAAGCCTGTGTTCGTACCAGATGTGACACTAATCCTTAACCGGTTTAATCCAGACAACCTAATGCACGTGTTCCACGATGACCTGATCCCAGCCTTCTACACTATGAAGCAGTATTCCGACTTGGATGACGAGGCGCGTTTGGTTTTTATGGAGGGCTGGGCTGAAGGCCCCCACTTTGACCTCTACAGACTGCTCAGCAGCAAGCAGCCGCTGCTCAAAGAGCAGCTGAGGAACTTTGGCAAGCTCATGTGTTTTACTAAATCTTACGTCGGCCTGTCCAAGATGACCACCTGGTACCAGTACGGTTTTGTTCAACCCCAGGGGCCCAAAGCCAACATGCTGGTCTCAGGAAATGAGATCCGGCAGTTTGCCAGGGCTCTGATGGAGAAAATGAACATCACAAGGggggaggaagtggagaagGACGGAGGGAACGCCGAAGACGATAAAGAGAAAAGGGCTGAATACATAGTTGTGTTCAGTCGTTCAGCAACCAGGCTGATCGTGAACGAAGCGGCGCTAATCATGGCACTGGCCCAGGAGTTCCAGATGAGAGTGGTCACAGTGTCCCTGGAGGAGCAGTCTTTCCCCGGTATCGTCCAGGTGATCAGCGGGGCTTCCATGTTGGTCAGTATGCATGGGGCTCAGCTGAtcacctctctcttcctccccagAGGAGCTGCCGTGGTGGAGCTGTTCCCGTTTGCAGTGAACCCAGAGCAGTACACCCCGTACAAAACCCTAGCCACCCTCCCAGGCATGGACCTTCACTACGTCTCCTGGAGGAACACCAAGGAGGAGAACACCATCACCCACCCAGACAGACCCTGGGAACAAGGGGGCATCGCCCACTTGGAGAAGGAGGAGCGAGAGCGAATACTGGCGAGCAAAGACGTCCCCCGGCACCTGTGCTGCCGCAACCCAGAGTGGCTCTACCGGATCTACCAGGACACTTTGGTGGACATCCCTTCCTTTGTGGAAGTCCTCAAAGAGGGCATGAAGACAAAGCCCAGCGTGAAGAAGTCCAAGTCGGCCAGCACCGTCCACCCAGGCCGGGTCAGAGAAGCCCAGTGTCAGACCTTAGTCCAGACCCCTAACGAGGCTAAACTCACCGTCTCCTGGCAGATCCCGTGGAACCTGAAGTACCTGAAGGTGAGAGAGGTGAAGTACGAGGTGTGGATCCAGGAGCAGGGAGAGAACACATACATGCCTTACATCCTCCCCCAGCAGAACTACACCTTTTCAGAGAACATCAAGCCCTTCACCACCTACCTGGTGTGGGTCCGGTGCATCTTCAACAAGAACTTGCTGGGTCCCTTCGCAGATGTTCTGATGTGCAGGACCTAACCCTAACACTTCTACACAAAGCTTGTTCCAGACAATCCGTTGGAACAGTGGAGTGTTGGGTTACAGTTTGTCCAGTTATTTGTCAGATCCGTCCAATCCTAGAGCAGGCTGCTGAACTCTTGCCCAGCGCTGTTTTCCTTGGCCAgcacagacaacaaagatactTCTGCTAGAACTGCAAAAGACTGAACCACAGGGTCAGAATTCAGCGGCATCGGCCGTCAATGAATGGAACGGGTATTTCCTGTACCTAATGAAAGAAGTGAAAGTGCTATGTCTCTACTGAAAATACCAGAACTTAAATCAGCAGATTTATTTATGTgcaaataatatataacatgtttttttacgTATAAGTCCAAACACTGGTTCTTTACCTTTTACAGTATGCAATATAGCTTTTCTGTGAAGATCCTAAAAAAGATTTTAGACTAGCAAGATTTGTAATGTTTTCTGACTTGGTCCAGTGTCTCCTGTGTGCGTGATACCTGTGTGACTTAGTTTACCTACCAGTTGTCTGATTCCATGCACCATTGTCTGCAGAACCTAGCCAAAACCAAAGCAACATTTTCCATCATTCATGCCGTATTACTTTTTCACGTTCTACGTCTCTCCCACTCCTAATGTTGGCTCAGATTTATGCAGTTTTAAGCCTCTAAAGATATTGTAAAGGATTGGTGTAAGAGAACTGTCAAGCAAGAGTTTTCATGATTGCCACAATAATCAAGGTTTCTGACATAGGTGGAATTTCATTCCATGGAGCATTTTTGGGATGAAATATCTTCAAACTGTTCTCTTCCAAGTGTTTGGGTTTCCACAGTGCCCAGCCGCAAATTATCGGTTTTACTGCATGAATAAAAGATTTCTCTCTAATTGGCACTAATTACGACCATAACTATTATAATTTTGAGTGGAGAGTGAATCGAGTTCGCCAGGCTATAATTAGTAGACCGTCAGATTTGATTGCATTTCCATTATGATAAGAAGGCATGTTGCTGCTTATGATTAACTAAAATAGATTCCCAGCAATGTGTCTTAACTTTTCAAGAAGAATGTTGAGATTGAAACAGACAAGCTGGCTGTTTCTAAGAAAGTGCTGCTTGTTGcttgatgtgtatgtgtgtgtgtggatgtgtgtgtgtgtgcgcgcacgctGTAGCAAAAGATGGTTTATGGCAcaagttaaaggtgctctaagcgacgttgggtgatgtcacttcttgttgacgttcaaagtattgtgaaacaaaacggaggctagctggcccctccctcctcctcatcccgtcccctctccctc

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0008152 metabolic process biological_process
GO:0007420 brain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95409 lncRNA upstream 49595 8311851 ~ 8314761 (+) True G71334
TU95397 lncRNA upstream 53592 8227835 ~ 8310764 (+) True G71326
TU95399 lncRNA upstream 53592 8307593 ~ 8310764 (+) False G71326
TU95393 lncRNA upstream 127638 8216677 ~ 8236718 (+) True G71325
TU95391 lncRNA upstream 164448 8198953 ~ 8199908 (+) True G71323
XR_005639714.1 lncRNA downstream 88650 8473270 ~ 8474591 (+) True LOC120562242
TU95423 lncRNA downstream 122239 8506859 ~ 8514393 (+) True G71348
TU95506 lncRNA downstream 163912 8548532 ~ 8548790 (+) True G71421
TU95509 lncRNA downstream 167909 8552529 ~ 8555278 (+) True G71424
TU95517 lncRNA downstream 209413 8594033 ~ 8620339 (+) True G71429
XM_039805237.1 mRNA upstream 54833 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA upstream 56291 8283381 ~ 8308065 (+) False ano10a
XM_039806766.1 mRNA upstream 165495 8187287 ~ 8198861 (+) True zgc:114181
XM_039805973.1 mRNA upstream 243030 8114521 ~ 8121326 (+) True rwdd1
XM_039804941.1 mRNA upstream 254991 8104864 ~ 8109365 (+) True LOC120561725
XM_039805857.1 mRNA downstream 70144 8454764 ~ 8504452 (+) True LOC120562241
XM_039805233.1 mRNA downstream 375426 8760046 ~ 8774822 (+) False LOC120561899
XM_039806986.1 mRNA downstream 703564 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 703569 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 731091 9115711 ~ 9123087 (+) True popdc3
XR_005639665.1 other upstream 54612 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 54612 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 242117 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 562976 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2403502 5960455 ~ 5960854 (+) True G70894
TU95565 other downstream 364323 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 425731 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 426114 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 426489 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 427628 8812248 ~ 8812336 (+) True trnay-gua_4

Expression Profile