RNA id: XM_039806376.1


Basic Information

Item Value
RNA id XM_039806376.1
length 2115
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC120562586
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10328164 ~ 10357777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGAGATTCAGAAGaggatgacgatgatgatgacagCGAGAGTGGATCAAGCAGAGGCCAAAATGGTTCATTTTTCACCAATGTATTCAATAGTTTGATTTCAGGTGGCGTTGAAGCCTGGCCACAGTTTAATGGACTGGATTCGATTTTCCAAGAGTGGAAAAGATCTGACAGGGCTCAGAGGGCGCCTGATTGAAGTTACCCAGGAAGAGCTGCAGAAACACAACACAAGGGAGGACTGCTGGACCTGCATACGAGGTATGGTTTACAACGTGACCCCCTACATGGACTACCACCCTGGTGGGGAAGCTGAGCTGATGAAGGCCGCTGGGATAGATGGCACTGAGCTGTTTGACCAGGTCCATCGTTGGGTGAACTATGAGTCCATGTTAAAAGAGTGCCTGGTGGGCAGGATGGCCACCAAGGTCCCCACAGCCAataaagCTATCACTCCTCCTACGCCACCGACTGGCCTCGCCCCACCTATGTCAGTGGCTCCTCCCCAAGACAAAGACTCCCGGCCTCGGTATGACTGGTTCCAAACTGATGTGACTGTTCATCTGGTCCTTTATGCTAAACGGAAGatcCCCAGCTCGGGCTGCACCACTGTTGATCTTGAGGCCGGGGTTCTACGGCTGGAAGTGCTGCTGGGGCAAATGTCCTACATGATACATTTACGTCTTGCTGATGAAGTTGAAGGAACTGTTGCTGTCCACACTGCCTTTTCAGTGGGAAAGATCCAGATCAGCATACGCAAACAGGCTAAAGAAAAATGGACAAGACTTGGTCAACCACTGGAATTTCACAATACATTTCTACGAAAAAAAGACAGAGCTCTCTATTATCGGGATTGTGTGTTGGTGTCTAAGACTCAGGTGAACCATAACACCCACGTGTTCAGATTGCAATTCCCACGTGGGACTGTCATGCATGTGCCTGTTGGAAAACACGTCTACCTCAAAGCCCTCATTCAAGACACAGAGGTAGTGAGGCCGTATACCCCAGTAGATCAGAACCTGGAAGCAGCCTCCCTCCGCTCCTCGCAGGAATCCGACCTCTACCTCATGATCAAAGTTTACCCTGATGGAGTGTTCACCCCACATCTCAACAGCCTGTGCATCGGTGACTGTATATCCATTAGTGGTCCAGAGGGTACCTTCAGTCTCCGCCCCCTTCGTGATGTCACATACCTCTACCTAATAGCAGCAGGCACGGGGTTCACGCCCATGGCTCGCCTCATCCAACTGGCCCTACAGGACATTGACACCATCAGAAAAACCAAGCTGCTCTTTTTGAACCGGCGAGAGGAGGACATCCTGTGGCGCTGTGAACTGGATGAACTGGCTGCTAATACGGACAGgtttCAGGTGGAGTACGTCGTCTCCGATCCCTGTGAAAGCTGGACTGGCAGGACGGGGCGGGTGGATGAGTCCATGCTCAAGGATTTCCTCAACAGGCCCGACGGGTCCAAacgctatgtgtgtgtgtgcggcccCGATGCCTTTACAGAGCTAACAATAGGGTTTTTGAAGCAGCAGGGCTTCAGTGAAGAGGAGCTCCACGCCTTCCAGGGCTGATGAGCTCTGCCTCGACCCCACCCTTCAAAGACTGTGTGCCTGCGAGCGAGAGAGCGACACAGAGAGtccattttaatttataaagcaGTGTTTGTGGGAGATAAATGGAACGTTGTATTTCTATGCACCAAGGGCGCTGAAGATGCCGACAGCAGGCAACACGACCCAGGCTTTGATGGGCTGTAAAGACAATCCCAAAAATCACAGTTCAGTAAGATTTGTATGATTCTGGCTCGTTTTGGTCCGTGTCTGGAATAAAGTTAATAATGTTCATAAAACTATAAGTTGAAACATTGAAAAGGTGTGTAAAATAAAAGCAGTAAAATATACTGAGACACAGAGAAAATCATGAGATGATGTAAACTGATGGATTATATGcaatataaaaacagaattaaCATGAGCTTTGGTGTGTGAAGCAGAGGATCTTCTGGAGATATTTATGGATATTAAAGTTCCAGTTACATGGATGGATGATTTTGCAGGAGTTATAACCATTGAAACCagtgaaataaaatgcattatggTAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95729 lncRNA upstream 125694 10201676 ~ 10202591 (+) True G71609
TU95728 lncRNA upstream 126146 10201676 ~ 10202139 (+) False G71609
TU95726 lncRNA upstream 324592 10003481 ~ 10003693 (+) True G71607
TU95707 lncRNA upstream 498978 9828594 ~ 9829307 (+) True G71591
TU95676 lncRNA upstream 872644 9455375 ~ 9455641 (+) True G71562
TU95864 lncRNA downstream 222383 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA downstream 222383 10580160 ~ 10589062 (+) False G71723
TU95887 lncRNA downstream 260480 10618257 ~ 10618575 (+) True G71738
TU95891 lncRNA downstream 386234 10744011 ~ 10744271 (+) True G71741
TU95873 lncRNA downstream 388231 10746008 ~ 10751849 (+) False LOC120561920
XM_039805617.1 mRNA upstream 87209 10215493 ~ 10241076 (+) False sim1a
XM_039805620.1 mRNA upstream 87209 10215493 ~ 10241076 (+) False sim1a
XM_039805618.1 mRNA upstream 87209 10215634 ~ 10241076 (+) True sim1a
XM_039805616.1 mRNA upstream 127880 10008474 ~ 10200405 (+) False ascc3
XM_039805614.1 mRNA upstream 127951 10007906 ~ 10200334 (+) False ascc3
XM_039806357.1 mRNA downstream 11088 10368865 ~ 10378754 (+) True LOC120562578
XM_039804822.1 mRNA downstream 159080 10516857 ~ 10518991 (+) True LOC120561655
XM_039805508.1 mRNA downstream 263415 10621192 ~ 10656796 (+) True eif3ea
XM_039807254.1 mRNA downstream 304701 10662478 ~ 10727745 (+) False rspo2
XM_039807253.1 mRNA downstream 305010 10662787 ~ 10727745 (+) False rspo2
TU95730 other upstream 120088 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 1478565 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1478948 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1479714 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1480804 8847392 ~ 8847481 (+) True trnay-gua_39
TU95885 other downstream 427877 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 462518 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 462518 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 1241260 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 1241260 11599037 ~ 11616242 (+) False G71896

Expression Profile