RNA id: XM_039806378.1


Basic Information

Item Value
RNA id XM_039806378.1
length 4628
RNA type mRNA
GC content 0.47
exon number 22
gene id capn7
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34048438 ~ 34081401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAACATGGTTGTTTTGGTATCCGCTAGTACAGCAGTCATCTGTCAAAAGATTAAGCAAAACTTTAAATAGCCAGTTTTGGCAACTGGATTAAGGACGCTCGTCAGTATCATATTTACTATGTTTTGTCCGAGTTGACGAATCGAACTGTGTTTCGAGAGAAAGTCAGACATTTCGTAAATTTGGCGAAccacgctagctagctagttagcttgtAACTCTGTCAACAATTTTGTGTTCAGCATGGACTGCACGGCGCTGGAGCTCGATGCTGTCAAATTTGCCAAAACAGCTGTCACCTATGACCAGAGCGGCAAATATAACGAGGCTGTATTTTATTATAAGGAGGCAGCCCAGGCCCTGATATATGCTGGCATGGCAGGGTCCAAACTGGAGGGAATCCAGGACAAAGTGAACGAGTACTTGGATAGAGTCCAAGCCCTCCACAATGCTGTCCAGGCCCAGAAGAGCGACCCGCTGAAGTCACGGCAGCATGTGGACCTGGAGCGAGCCCACTTCCTGGTCACCCAGGCTTTTGAGGAAGACGAGAAGGGAAATGATGATGAAGCCATTGAACTTTACACCCAGGCTGTGGAGCTGTGCATAAGCACGTCCAACGAGACGTCGGACCAGGCGCTGCAGACCAAGCTGAAGCAGCTGGCGCGTCAAGCCTTAGACAGGGCCGAGGGCCTTAAAGAATCCCAGTCCAAGTCAACTCCAACTCAGGACAAGACTGGGCCTGCTGGAGCCAAGCCCAGCAGCGGTGCCAGTTCTGGGGGGCCGGTCCGCCAGTTCTTCCCCCTCGGGCCAGACTTCAGCCTCAATGACCGACAGCAAGCCCAGCCGGTCCGGGCGGTGCAGTCCAGCGAGCCCCAGGGTCAGCGCTACACGTCGGAGGAGATCGAGGTGCTCAGGAGTACATCTACAATCAATGGAATAGCCTATGTGCCCTTCATGAGTGTGGACCTGAGGGAAAGATTTGCCTTTCCTGTCCCTTTCTcGGACAAAACAGGGAAACTGGCACTGTCACCCAAACAGAAAGCCATCTTCTCCCGCTGGGTCCGGCCGGACGAGATCTGCAATAACCCCACCATGATCATGTCTGTGTCCAGCTTCAGCATCAAACAGACGGTGGTTTCTGACTGTTCGTTTGTGGCGTCGCTAGCAATCAGCGCGGCGTACGAGAGGCGCTACAACAAGAAACTCATCACCAGCGTCATCTTCCCCCAGAACAGACGAGGGGAACCGGAGTATAACCCCTGTGGGAAGTACATGGTCAAGCTTCACATCAACGGAGTTCCAAGGAAGGTGATTATAGACGACTACCTGCCGGTGGATCACAACGGGGAGCTGCTGTGCTCCTACTCCAGCAACAGGAACGAGCTCTGGGTCTCCCTGATAGAGAAGGCCTACATGAAGGTGATGGGAGGCTACGACTTCCCTGGCTCCAACTCGAACATCGATCTGCACGCGCTCACCGGCTGGATCCCCGAACGCATCGCTATGCACTCAGACAATCAGTCATTCAGCAAGGACGACACTTTCCGTATGCTCTACCAGAGGTTTCACAGGGGTGACGTCCTTGTCACCACGGCAACGGGGGTGATGACAGAGGAAGAAGGGGAGAAATGGGGTTTAGTGCCAACACACGCCTACGCTGTTCTTGACATCAGGGATCACAAGGGAATGCGTTTCCTGCAGCTGAAGAATCCGTGGAGTCACCTGCGGTGGAAGGGCCGTTACAGCGAGCGTGACGAGAAGAACTGGACACCCGAACTCCTCAAGTACCTCAACTTTGACCCCAAAACGGCAAAGAAGTTTGACAATGGTGTTTTCTGGATCGCCTGGGAGGACCTTTGTCAGTACTATGATGTCATCTACCTGAGCTGGAACCCCGCCCTGTTCAAAGACTCCTCCTGTattcacagTAGCTGGGATGGGAAGCAGGGCCCAGTGAAGGACGTCTACAGTCTGGCCAACAATCCCCAGTACAAGCTGGAGGTCCAGTGTCCGACAGGGGGAGCTGCTGTGTGGGTGCTGCTCACCAGACACATCACTGACAAGgaTGATTTTGCACAAAACAGGGAGTTCATCACTCTTGTTGTTTACAAGACGGATGGGAAGAAGGTTTACTACCCAGCGGACCCCCCTCCTTACATCGACGGCATCCGCATCAACAGCCCGCACTACCTGACCAAGATGAGGCTGACCAGCGCGGGAACACACACCTTCACGCTGGTGGTTTCCCAGTACGAGAAACAGAACACCATCAACTACACACTGCGGGTGTACTCCGGATGCAAATTCTCCTTCTCCAAGATCCCAAATCCCTTCACTCAAACCAAAAGGATCAACGGCCAGTGGAAGGGCCCGAGCGCTGGAGGCTGTGGGAACTATAAGGATTCGTACAAACACAACCCCATCTATCAGATCAACCTGGAGCGGCCGGGACCGCTGCTGGTCGAGCTCCGAGGATCCAGGCAGtacagcgttggttttgagatgGTGACGGTGTCGATGGTGGGGGACCCAGGCCCGGCTGCCTTCCAGAAAAAGAACAGTGGAGATTACAGGTGTGGCTTCTGCTACATGGATGTGGACTACGTCCCAGCAGGCCTCTACAACGTCATCCCCACCACCTTCCTGCCCAAACAGGAAGGACCCTTCTTCTTGGACTTTGCCAGCACCTCGCCCCTCAAGGTCTCCCAGCTGCAGTGAAGACAGCGCTGCAGCGAGGACGGGGCTGGGAGAGAGGAGcagtgcagcagagcagcaacaCAGGGAACCCAGTACGGCAGCAGTTGAATGATGTCTCTTCGTTTTTCTTCACGTCTGTGGATGTGACGGCCGAGGGATGAGATATCGGCCTCATTTCATGTCGGCACTCGGCTTCAGACAGccgtctgtgtgtttttgattgTCACCATAAACCTTCTGCAggttgaaatgtaaatgtaataccCAGTACACATCCTCggtttactttttttaattgatttttactgcacttttaaaaaaaaaaaacatttctcatgTGTATTGTCAAACAATATATGGAAATGAATATGTCTTTGTTTCTTCAACACAAGCAGTTTAACCCTTTTTCAGAtatcaagatttttttttttttttctggtgtggACAGTTTCACCCATCAGCAGTCGGTCATGTACGAATGTTGCTGCTCTATTCGGTGCCGCTTATCTCTGCAAAACTAGCTAATGCTGTGCAGTTGCATCACAAATtccttggcaaaaaaaaaaaaagaagtctgtaGCAGTCGAAGGGCGCGCTGCGGCGGATCCAGCGACGGCAGAATGTGTTCAAATGAACGTCGAGGTTTTGTGGAAGCAGTCAGCCAACGTCACACTGAAGTAAACCGGAGTTTGTTTTCCGTTTCTGAAAAATTCAAATGAAAAGTCAGTGACAAAGACACTTTTGCAAAAGGCGTTTATATGCAAATGTTTACATGGAAGTTCGATAGTGACGCTGACTGCGGCGTACAGCCGGCTACACAGCGTTGAGGCTTGAGTCTTTCTGTGTTTACGGAGCGCCATCCACAACTGTAAAGCCCAACAGTCTGACTGCCacaaattattatttcattCTACAGTTTGtgttgtataaaatgtttattttttatttaaattttttttttttaaatgtccctcaAACGGTCACAGAGCCGAAGGTTACATCTCCACTTTgctttgtctgaccaacagtgcAAAACTATAAAATATGCAATTTACAGTGTGTAATGTAAAAGACATTTCTGGACCTGGAACcagtaatgttttttattttttattttttttggtgttgcatgtttgcttgataaatgacttaaactattaattgattatcaaagtTGTTAATATATTTTTTCGTTGTTCGACTATTCGATGAATCGACTACATTATGAATTTGTTTTCCCTCCGCTGCGGCCTGTATATTTGACTCAATGCAGTCTGCATCAACCAGGCACTGTGCACTGAATGAGGACACtattacaaaaacattttcacaatataatcagattttttttttttttatgattttatcaTGTTAACCTCAAGCATTGGCTTTGTTTTACAATCATTCAATTTCTTTTAGTTGTCAACACACAGTGCAAAGAGAACTTGCCTCACTACTGTAGACATTTATTCAATGCAAATGATATATGTGATGAACTTCATAGTGATGCTTCTGGGGAGCACGGTGACTGTTTTCACTCATAACTCATAACTACTGTTAACAATAACTCATAGTAAACTTAGTGCTGACGACTGTAAATGGACTATACACGCTGGTGTTCTAAAAGGGTGAAATGTTCTGTTCAGGAAGGAATATAGCTTTTAATATATGTACTTTGCCAAGTATTTCTGTCAAATATCCAATCGCTGATTGATGATCAATCATTATTTTTATGAATGCCATCTTTTCTGTTACCAAACTCagttatgtatttttaattggCAGCAAGCCGACTAATTTCAATATGAAGCAGGACAATCTTGCAGCAACCTGTTGTATGAGTGATGATGTAATGTTTGCAGAGCTTGCGCTAAATGTTGGGTACACTGACGTCTTCAAACTTTGAATACATAAAAATGATATCCGCTTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104417 lncRNA downstream 85197 33962752 ~ 33963241 (-) True G78118
TU104409 lncRNA downstream 139553 33906420 ~ 33908885 (-) True G78110
TU104392 lncRNA downstream 163712 33881005 ~ 33884726 (-) True G78097
TU104385 lncRNA downstream 176646 33737185 ~ 33871792 (-) True G78094
TU104399 lncRNA downstream 189221 33824695 ~ 33859217 (-) True G78101
TU104452 lncRNA upstream 13883 34095284 ~ 34095553 (-) False LOC120561752
TU104597 lncRNA upstream 14921 34096322 ~ 34097590 (-) False LOC120561752
XR_005639652.1 lncRNA upstream 153813 34235214 ~ 34235852 (-) True LOC120561768
XR_005639644.1 lncRNA upstream 175258 34256659 ~ 34257473 (-) True LOC120561761
TU104629 lncRNA upstream 187994 34269395 ~ 34270001 (-) False LOC120561747
XM_039805692.1 mRNA downstream 154629 33879773 ~ 33893809 (-) True eaf1
XM_039805277.1 mRNA downstream 445490 33590521 ~ 33602948 (-) True LOC120561932
XM_039805278.1 mRNA downstream 445495 33599029 ~ 33602943 (-) False LOC120561932
XM_039805279.1 mRNA downstream 467052 33567858 ~ 33581386 (-) True LOC120561933
XM_039805274.1 mRNA downstream 491473 33515694 ~ 33556965 (-) False atg5
XM_039804986.1 mRNA upstream 13850 34095251 ~ 34097511 (-) True LOC120561752
XM_039804976.1 mRNA upstream 48137 34129538 ~ 34132432 (-) True LOC120561744
XM_039804977.1 mRNA upstream 62773 34144174 ~ 34146909 (-) True LOC120561745
XM_039804978.1 mRNA upstream 82394 34163795 ~ 34172230 (-) True LOC120561746
XM_039804985.1 mRNA upstream 91367 34172768 ~ 34188410 (-) True LOC120561751
XR_005639667.1 other downstream 451133 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1614781 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2529402 31516455 ~ 31519036 (-) True G77573
XR_005639673.1 other downstream 2651935 31239787 ~ 31396503 (-) False LOC120561969
TU104595 other upstream 14242 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 48642 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 410945 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 893423 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 930702 35012103 ~ 35014522 (-) True G78444

Expression Profile