RNA id: XM_039806391.1


Basic Information

Item Value
RNA id XM_039806391.1
length 4713
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC120562594
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11721116 ~ 11768925 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTCCACCATACTTGGCTAGTATGATCATGAAACGGCAAGGTGAATGATATGAAGTATGTGCAGGCCGTGCTATAGAGACCTCACTGTTACATGATCTGGAATCTGCTAATGTGCTTAAAACTGAAGAGAATCGAGAGAAGCCAATAAAATGAAGAACAGAAGTGTGGTGGAATAACAAACCTGATGAACAGAACTCTCACAATTTCTGTCCACTTACACAATGATGCCCTGGAATTGAGTGAAAACCTTCCCTTTATTTGGAAGAGACAAAGagattgttaaatttaaatttggGACTTTTTTAGCCTGAAAAAAGTCCATATTACTTGTCTGAATAAATGGTAAATCTCCATACGTTGCTTTCTATGGTGCCAGTGGCACGCAGATAGTTTGAGCCAGTCATTCATTGACAGTGCTAGATGAAGATGGATAGATGGTGTTGCATCCAGTAACTGGAGAGTGCTAAATGAGCTGCTGTGTAAGCAGCTTGATCTCTGGATGATTGAAGGCAGATAGTATTTTAACTGACCAACAAAGGCACGCTAGACATCCCTCCATGTGCAACTGCAGATAGCAGTAGTTTCAGGTTTTATTGAGCTTGTGAAAGGCCAGGTAGACAGGGTAGTTTAGTTTGTACAATGAATCCTAGAGACAGCGTGGAGGTGATGGAGACCCAGACCCGAGGTCAGAAGGAGAAGCTGGTTGAAGACCCGATCAACCCTGGCAACGAGGTTGAGGGTGAGGACGACAAAATCCCCGGGGCTTACAACTGCAACGTTTGTGGACGCAGCTTCCCGTTCCTTAGCTCTTTGTCGCAGCATATGAGACGCCACACTGGTGCGCGGCCTTACAAATGCCCCTACTGTGACCACAGGGCCTCTCAGAAGGGCAACCTCAAAGTTCACATCCGCAGCCACAAACTGGGCACGCTCTCTAGCCACCACTCCAATGAGGATGAAGAGGGTGgggccgaggaggaggagatgagtGTTTCAGAGGGTCTCGACGGAGGTACGAGTCCAACTAAGAGCAGCTCCGCCTGTAACCGGATGATCAATGGGGACAGTGGTGAGGAGAGTCGGAGGAAAGTGCCTGGGAGGAGCATGAAAAGAGAGAAGCCCGTTACCGACCAGAGGCCTTACTGTTGCCGTCTGTGTGGCTACGAGGCGCTTCGAGAAGACCAGCTCCTCAGCCATATTGAAAAGGTCCACATAACAGCAGATACAGAGGAGGAGACCACTGTTAAGGAAGAGGCTGTGCCCGAACCTGATGTCGTCCAACCCCAGAGTGATGGGACCTTCCCCTGTGAGACCTGTGGCCAGATCTTTACCCAGGCCTGGTTTCTAAAGTCACACATGAAGAAACATGCAGGGATCCTGGACCACTGCTGTCGTATTTGTGGACGACGGTTCCGCGAAGCTTGGTTTCTCAAATcgcacatgaaaacacacaacaccagAGCCAGGTCGAGGTCAAAAGCAGAATCCACTGAGCAACCGGCCACTATCAACGACGTAGCCCAGGATCCTGAAATTGTCACTGGCTCTATTACATCCATCTATCAGATGTGTTCCAAATGTGGGAACCTGTTCCACGACAAAGAGAGCCTGAGGGCCCATGACAAAATCCACAGTCTAAGTCATGGCAGGAAATCCCAGAACCAATGCAAACTCAGTGATGACGAGGACTCACCAGCTGCTAAGAGACGTTACCTTGACTACTTTAGCCTCCAGCCTGTTGAGAAAAAGACCCTGGATGAAAAGGAGTGTGAGAAGAAGATGCTAGGTCAAAGAATCCCAGAGCTGGATCCAGTTTGCAGCTACCAGGCCTGGCAATTAGCTACTAAAGGAAGGGTTGTTGAGCCAGTGGAGGCGAGTTCCAAGGCCTCCTATGGGGGAGGAAGTATGGGAGAGGAGGCCCTCGCCGGAGCTGCTGTGGTTTTTGAGAAGGAAAGCAGCCGTTATGTCCTGCAAGGTCAAGCGAAACGCAGCTCAGGGCGACGCAGCAGCTCCGGATTGGGAAGCCATGCTTCTTCAGGGGATCGGACACCGGAGAGTCTTAGCGACTCAGAGTACCGGCCTTCGTCTCGCCAGGACCGCCGGCGACCATCTTCCTCGAAGTCTAACGAGTGCTTTGAGTGCGGGAAGGTGTTTCGCAGTCGTCACCAGATGATCGTCCACCAGCGGGTCCACAGTAAGCACGGAGGTAGGGCATCTGTGGGACACAATGAAAGAACTGCAAGAGACGACCGATGGGGGTCCACCAGTGATCCAGAGTCAGGCTCCCCCAGCCGGCCCAGCACCCCAGGGTATGGAGACTCTCCACCAGCGTCCACCCTTGGAGACCAGGCCTCAGAGATGGGTACCGCAAAATCTGGAGAGATTGCAGATGAGAAGCCTTACATCTGCACCCTTTGTGACTTTGTCACCACAGAGTTGCAGGCCTATTTGACCCATGTCCGTGTCCAACACCCGGCTGCCCCCGGAGATAGACCCAGCCCCATTCCCAGCCCAAGCTCCAGCTCGGAAAGAGGCACCCCAAGTGGTTATCCCAAGCTCAAGAAAGTTCTTCTTCAGGGGTTGAACAACTCTGCATCCCCTCCTGCGTACCTTTCAGCTCGATCCTCCTCGCTCGATCCCGGCATGACCCCTGTGGATCTATGTGTGAGGGCTGAGGGCTGCAGGGGCATAGCCTCCCTAACCCAGGACAGGAAGAGCCTCCCTAGCCACAAGTGCTCCTTCTGCTCCCACTCCACCCGCTACCCCGAGGTGCTCTGGATGCACCAGACTGTGGCTCACCGCAtcaacagcagcagctccaATCTTGCTCCTAAATGGGCTCTCAAACACAGCTCCAAGGGCTCCAGGGACAACTTGTTATCCTCCAGGAGACGCACTGGTCCCCCGCCAGTCCTGGAGGGAAAGGAATGCCCACCGCTGCCTCCACTGATGCGTGCCCAACGTACCCAGCCCCCGACCTACTCCAGCGAGGTTCTAAAGAAAAGCAGGCCAGCCAGTCAGGCAGCCatgccatcatcatcatcctcctctaccccctcctcctcattcTCCAGGGGCTCCTTATCCACCCCAGGCACCCAAGCTCGGAAAGTCCCCGTCCggccaggcagcagcagcaacagcaacagcaacagcaacagcaacagcagcagcaacagcagcagcagcgtcagACACATGGAGGACCAGAGTCATCAGTCTCGCTTCAAACCCAAAGCGGATATTTACCCTCGGGGAGGCTCGTCGTCTTCCTCCAGCTCCTTGGAGAAGAGCACCGGTGCCCTCTCACGATCCTCAGCCCCAAGCCCCAGCTCTGCTACTGCATCCCGGATGACTGACCGCTACTTGATGCCCCAAGAGGGCCTTGGCTTCATGCTGTCCAGCAAACACGGCCTATCAGAGTACAGCCGAGCAAGGGGTTCCCCTCATCAGCCGCTTCCCAACTCCCACGGCCAGAGCCGAGCTAACGCTACGAGGCCCAGCACCATCACCCACAGCTCCACAGCGGGACACAACTACGGATCTTCCCAGGCACATGGAGGCACTCTGCTgaattcctcctcctcctcttcttctttgcctTCAGAGGCTCGTGGAGATGTGAAGCAGGAGCCAATCGCAGAGACACCAGAGACGCCAAGTGACATCCTCGGCTTCCTCAAAAACTACAACCCCCACGAACTGGCTTCCCTCTACCACCGCTGGGGTGCAGCCAATGCAATGCTGGATCCAACTGggATGCTGAGGTCTATGATGCGGCAGGGACAGTATTTCTGCCATGAGTGCGGGAAGAGTTTCAGTCAGCCCAGCCACCTGCGCACTCATATGAGATCCCACACAGGGGAGAGGCCATTCCTCTGCCAGCTCTGCCCATACCGAGCATCTCAGAAAGGGAACCTAAAGACGCACGTCCAGAGTGTCCACCATATGCCTTTTGACAACAGCCAGTACCCAGACACAAGGAGCTTGTTACTGAGCCGGGAGGAGCGAGGAGCGCTGGCTGCCAAACACCCACCAgcgccccaacaacaacaacaacaacaacaacaacaacagtagaCCATCTGATAGATCGGGATCTGGACGTGGGACCAGACTAGTCAGGGAATCACACAATCTAAAAACACTATCGCCATTCCTAAAAATCAGAGGAGTCCTCTCCACGCATCATCCTTTAATGACCTTAGAAGAATTATCTACAATGAAGACTCTTGtagttgggtttttttttttttcacataagaAGCTAGTTAAAGCTGTGCTAGGCAATTTTAGCAGCAGAGAAGAGTGTCTTATCTACTAACGGAAAGAATTTCTGGTGAAATTCTGCATttggaaataaaaagaaaaaaaagaaaagagaagtgtCAGGTGTGTGCACACAGGTGggacatatttttttttctccgcacAGAAGAAATGAAGAGTGAAAAAGTGTCCCCTCAGCAGGAAAGCTGGACTCACCAAGGATCGATCTTTTGCTAATTTAGTTTGAAGGTTGGCAACACTGGGCAGATTGTGTGTAGTTTACATCACCTTTCAAGGATTTCTGATTATAGAAGCCCTCAAAATTCAAAGAGTTGCCTCTTGAAGCCCTCAAAATTCAAAGAGTTGCCTCTTGAAGCCCTCAAAATTCAAAGAGTTGCCTCTTGAAGCCCTCAAAATTCAAAGAGTTGCCTCTTGCTGCCAT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22411 ZNF516; zinc finger protein 516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96071 lncRNA upstream 164197 11537184 ~ 11570067 (+) True mbpb
TU96053 lncRNA upstream 250621 11483406 ~ 11483643 (+) True G71882
TU96042 lncRNA upstream 252175 11481645 ~ 11482089 (+) False depdc1b
TU96041 lncRNA upstream 297565 11436471 ~ 11436699 (+) True G71873
XR_005639740.1 lncRNA upstream 424412 11236294 ~ 11309852 (+) True LOC120562313
TU96118 lncRNA downstream 52715 11821640 ~ 11821934 (+) True G71929
TU96144 lncRNA downstream 443085 12212010 ~ 12215147 (+) True G71952
TU96145 lncRNA downstream 447338 12216263 ~ 12216560 (+) True G71953
TU96151 lncRNA downstream 504469 12273394 ~ 12275941 (+) True G71959
TU96153 lncRNA downstream 561143 12330068 ~ 12330962 (+) True G71961
XM_039805264.1 mRNA upstream 24006 11708381 ~ 11710258 (+) True LOC120561922
XM_039805416.1 mRNA upstream 118364 11599216 ~ 11615900 (+) False LOC120562012
XM_039805711.1 mRNA downstream 201952 11970877 ~ 11975946 (+) True LOC120562168
XM_039805296.1 mRNA downstream 658616 12427541 ~ 12455916 (+) False LOC120561949
XM_039805295.1 mRNA downstream 658664 12427589 ~ 12455916 (+) True LOC120561949
XM_039805297.1 mRNA downstream 672989 12441914 ~ 12455916 (+) False LOC120561949
XM_039806899.1 mRNA downstream 697024 12465949 ~ 12476564 (+) True tbc1d31
TU96107 other upstream 24755 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 118022 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 118022 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 912764 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 912847 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 991892 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 1356009 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1699302 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 2364686 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 2406924 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile