RNA id: XM_039806410.1


Basic Information

Item Value
RNA id XM_039806410.1
length 840
RNA type mRNA
GC content 0.48
exon number 4
gene id apoa2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25497690 ~ 25499464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGCAGTCCCCCCCTATATCATCCTGTCCAGATGTGAGCTCCGAGTTACAGACAACTCACTTTCAGAGAAGACTGTCACTTCTTGGATCTGTACATCCAACACAACAGCAGacATGAATGCTAAATACGCCTTGGCACTGATCCTCGCTCTGCAGGTCTCTGTGAGCCTGTGTGAGATTCCCACACCATCGGCGGATCTTGTTGAAAAGTATGATTCCATGAAATCTGTGTTCTACCAGAGGCTGCTGAATGCTTACGGCAAGCTGCATGTCGCTGCTGCTCCTATGTTTGAGAAAGCCGGAGACAGTGATCATGGAAAGGCTGCCAAAGACTTCTTTGAGGGGCTGCAGACCAAACCTGAGTTCCAAGCCGCCGTCAAGGTTGCCTCTGGCCTGGGCCAGGAGGCATCTCCCCTGGTGGACAAGGCCCGTTCAGCAGTGCTGGGTCTGTACGGACACTACGTGCGCCCCTACGCCGGTGACTACCTGAGCGAAAGCATCGACAACATCAAGGTCTACCTGGACAAATACCTGCCCGCTCAGTAAAGAAGAACAACCAGAGCAAGGCACCTGTCAGCAGCCTTTAATAGATGATAGATCATAGGAGCAAACACCAGTTTAGGCTGAGAAGAGCAATGCACAATGCAAATACAATCCTTTGCCTCTTTTCAAATCAACATCTACAGCCAAATCATGCAGAGTTAAAAGCAGGGCGAACACCACCTATGCAAattgtgcatgtacagtattttgtgTTTGATACACTAGCCAAAGTCTCTGTGTGATtgattgtgtatgtgtatgtgtgagtgtgttcatTAAAATGAACTGGAAACTA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101701 lncRNA upstream 120701 25374207 ~ 25376989 (+) True LOC120561674
TU101653 lncRNA upstream 150474 25346263 ~ 25347216 (+) True G75977
XR_005639632.1 lncRNA upstream 161732 25335016 ~ 25335958 (+) True LOC120561670
TU101606 lncRNA upstream 352886 25144579 ~ 25144804 (+) True G75943
TU101605 lncRNA upstream 353416 25144058 ~ 25144274 (+) True G75942
TU101753 lncRNA downstream 42935 25542399 ~ 25596454 (+) True G76055
TU101801 lncRNA downstream 106686 25606150 ~ 25617478 (+) True G76083
TU101800 lncRNA downstream 110937 25610401 ~ 25617478 (+) False G76083
TU101807 lncRNA downstream 124966 25624430 ~ 25696175 (+) False G76089
TU101811 lncRNA downstream 124966 25624430 ~ 25701085 (+) True G76089
XM_039806411.1 mRNA upstream 1044 25495718 ~ 25496646 (+) True apoc4
XM_039804662.1 mRNA upstream 4428 25491784 ~ 25493262 (+) True apoc1
XM_039806609.1 mRNA upstream 9798 25485928 ~ 25487892 (+) True apoeb
XM_039806607.1 mRNA upstream 10515 25485559 ~ 25487175 (+) False apoeb
XM_039806610.1 mRNA upstream 16983 25479261 ~ 25480707 (+) True LOC120562741
XM_039806409.1 mRNA downstream 3174 25502638 ~ 25503905 (+) False apoc2
XM_039806408.1 mRNA downstream 6987 25506451 ~ 25510293 (+) True LOC120562605
XM_039806145.1 mRNA downstream 293823 25793287 ~ 25795331 (+) False taf12
XM_039805564.1 mRNA downstream 375213 25874677 ~ 25877640 (+) True cited4b
XM_039807265.1 mRNA downstream 531299 26030763 ~ 26044380 (+) False LOC120563139
TU101741 other upstream 4533 25491814 ~ 25493157 (+) False apoc1
TU101448 other upstream 508571 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 1060871 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 1060920 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 1443362 24054272 ~ 24054328 (+) True LOC120563208
TU101746 other downstream 3136 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 640437 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1308654 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 1383986 26883450 ~ 26886546 (+) True G76355
TU102237 other downstream 1785074 27284538 ~ 27288457 (+) True G76417

Expression Profile