RNA id: XM_039806426.1


Basic Information

Item Value
RNA id XM_039806426.1
length 1726
RNA type mRNA
GC content 0.53
exon number 11
gene id slc2a3b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23498789 ~ 23508665 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAATACATGAAGCAGGGGGAGGGGTTTACTGTCATTTTGGGCACTAACTCCTGTTGAATTCAGTGAGTACAGAAAGTCTCTCTGAGTCCATCAGgttttctCGACTGACTGTttgcagaagtgtgtgtgtgtaaggaatTAGAGGCAGCTCTGTCTAAGAAGCTTCAGTCTGCGATCTGAAGAGTCCCTGTAGTTTTCTTCTGAATATCATCTATCAAGTAGCAGAGATGGAGCGGATGGAGGGCGATAAGCCGAAGAAGAAGGTGACCTTTTACCTTCTCTACTGCGTTGCAACAGCAGTCATCGGCTCGTTACAGTTTGGCTACAACACCGGGGTCATCAATGCACCAGAgcagAAATTGCGTAGGTTTTTCCAGAATGTGTCGATGGAGCGGTACGGGGAGCCATTCAGCTCAGGAACCAACACCATGGTGTGGAGCTTTGCTGTGGCCATCTTCAGTGTGGGAGGCATGGTCGGGTCTTTCTCTGTCGGAGTCATGGTCACCAAATTTGGCAGGCGTAAGTCCATGCTGATATCTAACTTCCTAGCTGTTCTCGGGGGGGGTCTGATGGGTATTTCGTCCGTGTCTAAATCTTTTGAGTTGGTCATTGTCGGCCGGTTGATCATCGGAGTGTTCTGCGGACTGTGCACGGGACTGACACCCATGTACGTTGGCGAGATCTCTCCCACTGCTGTCAGAGGAGCCTTCGGCACGCTGCACCAGCTCGGTGTAGTTATTGGCATCCTGGTGGCACAGATCTTCGGTCTGGAGTTTCTGCTTGGCTCAGACACTCTGTGGCCTGTGCTGCTGGCTCTGACCGTCCTGCCCGCCATAGTGCAGAGCATCATGCTGCCCTTCTGCCCTGAAAGCCCGCGCTACCTGCTCATTGTCCTCAACCAGGAGGAGGAGGCAAGGAAAGCGCTGGTGCGTCTGCGTGGCGTTGATGATGTGAGTGATGATATTCAGGAGATGAAGGAAGAAGGGATGAAGATGGCCATGGAGAAGAAAGTGACCATCCCCGAACTCTTCCGCTCCCCAAACTACCGTCAACCGATCATCATCGCTATAGtcctccagctctctcagcAGCTGTCTGGCATCAACGCTGTGTTTTACTACTCCACAGGTATATTTGACACAGCTGGTGTTACTCAACCCATATACGCCACCATAGGAGCTGGAGTTGTCAACACTGTGTTTACTGTTGTCTCTCTCTTCCTGGTCGAACGGGCGGGACGAAGGACGTTGCACCTGATTGGTCTGGGTGGAATGGCTATCTTTGCCCTCATTATGACGATCTCCCTGGTTTTGGTGAAGACCACCCCGTCTCTGAGCTACCTGGCCATTGTGGCTGTGTTCGGCTTTGTTGCCAGTTTTGAGATGGGTCCAGGTCCCATCCCCTGGTTCATCGTGGCTGAACTCTTCTCCCAGGGGCCCCGGCCTGCTGCCATGGCCGTCTCTGGTTTCTCCAACTGGACTGCCAACTTCCTGGTGGGGCTGGGTTTCCCTAAACTGGAGGAACTTTGTGGTCCTTACGTCTTCATCATCTTTACGGTCCTCCTCATCCTGTTCTTCATCTTCACCTACCTGCGAGTGCCTGAGACCAGAGGAAGGACCTTTGATGACATTTCTCAGGGATTCGCTGCCAGTGCAGGGAAACCCTCAACAGAGCCTGCACCCTTGTCCCCCACAGACAAGGTTCCCATGATGAATCTTCCTTAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100711 lncRNA upstream 5008 23494213 ~ 23494477 (+) True G75301
TU100617 lncRNA upstream 58259 23437096 ~ 23441226 (+) True G75227
TU100585 lncRNA upstream 145310 23351145 ~ 23354175 (+) True G75199
TU100582 lncRNA upstream 148718 23346840 ~ 23350767 (+) True G75197
TU100578 lncRNA upstream 156808 23340092 ~ 23342677 (+) True G75196
TU100720 lncRNA downstream 59531 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA downstream 59531 23568196 ~ 23569856 (+) False trpv6
XR_005639669.1 lncRNA downstream 122751 23631416 ~ 23633834 (+) True LOC120561968
TU100761 lncRNA downstream 139662 23648327 ~ 23651493 (+) False casp2
TU100857 lncRNA downstream 259575 23768240 ~ 23813408 (+) True LOC120563204
XM_039806414.1 mRNA upstream 5451 23491192 ~ 23494034 (+) False LOC120562612
XM_039806512.1 mRNA upstream 62441 23433649 ~ 23437044 (+) True mfap5
XM_039806513.1 mRNA upstream 62441 23433697 ~ 23437044 (+) False mfap5
XM_039806510.1 mRNA upstream 72840 23420347 ~ 23426645 (+) True sbk3
XM_039805932.1 mRNA upstream 97775 23395934 ~ 23401710 (+) True foxj2
XM_039805777.1 mRNA downstream 3890 23512555 ~ 23556483 (+) True ephb6
XM_039805778.1 mRNA downstream 52183 23560848 ~ 23568248 (+) True trpv6
XM_039805779.1 mRNA downstream 52183 23560848 ~ 23567915 (+) False trpv6
XM_039804697.1 mRNA downstream 85196 23593861 ~ 23600002 (+) True m6pr
XM_039804699.1 mRNA downstream 92437 23601102 ~ 23608496 (+) True phc1
TU100710 other upstream 5462 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 597437 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 679432 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 831941 22660479 ~ 22667544 (+) False LOC120562537
TU100052 other upstream 876401 22616972 ~ 22623084 (+) False arnt
XR_005639923.1 other downstream 255650 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 258520 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 259568 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 365251 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 522725 24031390 ~ 24032445 (+) False atn1

Expression Profile