RNA id: XM_039806429.1


Basic Information

Item Value
RNA id XM_039806429.1
length 3344
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC120562623
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17095056 ~ 17107677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGCTATGGAGCCAGTCCAAACAACTTTTCCAGAGGAACTGCACACCACAACGCGTCCAGTCGTCCATCAAAGTGCTGAGATTTACCAAAGCAGCCGAACACGTGACGAGAAATTAGCTTAACGCCTTAATTTAGCTTTTGAGTGTATAATTCAGTTCTTTTCTTACTATATAGTTATTTCTCCTTACAACTGTCGTCTCTTTTTGGAAGTTACGATGAAGAGTCTGCGGTTGTTGTTCCTCGTCGGGCTGGCGACTGGGTTTATCAGTGAAAAACTCTTTGTCTCCTCCTTTTCCACGACAGATGACATATACCTAGAGGGCCGAACGTCAGGTGACCTCCCCATAGATGATGAAGATGGTGATGACGGCGGATCAGGCTCTGGATCCGGAGCCTTTGATGAAGAGGTATTCAGGAGGTTCACTAACTTCTCTCAGACCACAGTCTCCAAAGAAACGGTTCCAACTCAACCACCGCCAACAGCAGACTCTCCTCACAACCCATCAACCACAGCAGCAACCAAAGTGaaggacacagagacaacaccATTCATATTACCTAATGGGGACAGCAGTGATGAGGAGGTGACAGCTGATTGGGTCACAGAGAGCTCCACCAGCAAGCCTCCCAGTGAAActactgcaaccaaattcggcaTAGACATCACTGTAATCAATGATACCGTCGAGGATAACAGTCTGGATAGGTGGGATGTCTCAACACCCAAAAACCGCCAAGACGAAGTCCTGATTGCACATCACGAAAATGATCTTAAGGCCACCAACGGCCGAAGCAGAATATATGACATGGACTCTCCGGCAGAGGTGACCTCTGAGAACATGTGGGAGAGGACGGAAGTGCTGGCAGCGGTGATAGCTTGCGGAGTGATTGGATTCCTCTGTGctgttttcctcctcctcctaatCGCCTACCGTATGAAGAAGAAGGACGAAGGTAGCTACAACCTGGGAGACACCAAAGATTCCACAACAGCCTATCAGAAAGCGCCTACCAAGGAGTTCTACGCCTGAACTGACCAATAGGGACTTTAAATGGAGTGTGTCTCCTCCCAATCAGGACTAAGAATGGATCTATAAACAACTGAAGATGATCCCTCTTGATGAAGTTTGAAGACAAGCACCTCTGTTCTTCTTCAGTGCTCTCgccattattatttttctcatcTTTGATGCTATCCTTTCACATCTCGTTGGACTTGGTTCTGCATTACAGAGAAATTGTCCCATTTAGCAGAGCTACAGCCTGAAATGTCCCAGCTCAGCTTAACAACATTGAGGAAGTTCACAGAAACAAATTAATTGCCTTAACACATTTTGAATGCTGTTAATTGAAATGGTACCACATATGGGATTAGTATTACAAAGGGCCTTCACAAATGTAAACCCTTTTCCTGTTATTTGAGGTCgaatttgctcttttttttacatttttcattgttGCATTTCATTTTCTGTACGCTTTCTTTGCTGAATCgatgatttgtttttgttgttatgagGAATGAATATGTTTTTTCATATGCTGTCCAGTATTTGAATGAGAGATGATGTTTCTCTGCAggtacatatttttgttgctttcttaCAGATTTCTGACACTTGTAGAACTGACCAAATATAAATGTgctttaattgtattttgaaaaattatttttactagCCTTTTCAATGTGTTTTGATGTTTAGAGATTATATTTCCGTAAGCCATTTTTTAAGAGATTTCAGCTATTGTATTCATACAGTGGTAGCCGTATGTTGGCCCTCAACTTTGCATCCAGCATTAGTCATATTTTAAGGACTATTTTATTTGATGACTGAGTACAGCAAGCACGTGTAACAGGATTCCTCAGGTAAAGCCAAGGCTAATGACTATAATTCAGAAACCGTAAAAGTTACCAACGATTTCTgccaaaacacaacacattccTTTCTGACTGTCAAATGCATACAGCTACCATAGCAGGTTTGGACTTAAAGGGACAGTGATAATGTAACTGACAGGATTATCAAAAATCTGTAATATATTCATGTCTTacaaattattttcaaataGTTACAATGTTAGGTAGTGTAGGCATGTCAGATTTTGCCTCAACCAGCCAACCAAAGAGAGCATGGGACCTTCTAGAGAATTTTTAGAGATATTCCCTTTTCACAGCACATCATTCTTACTTGTATAGACcctgttaaacaaattatttaaGTGAAAATATCAGGGATTTGCCCTATGTATAGTGTCTGATGAATTTTAAGCATCTACCTACTGCTTATTATGagtcaaaaaactaaacttgATGATCAGTGGTCGATGCATACAGAGAGGTGGGGCTAAGTGGTTAAACTATGAGTAGACTTGCCCTGATAGCCACACATTCTAATTGAAattatattgttttgtatttctaTGGCTTCGACTTTGTTGACATGAGTTTAATGTCGTATAACAGATGTTAAATTGGTATAGGCATTCTTATAGGATTGTAATAGCTATTTTTGTTTGTTGCCCCTGTCTGTTGCAAAATTTGTAGCAGCAGTTTTTGTGCCTATTAACTGTTTGAttcccttttattttttgtccTTTGGTCAAGTCTACTTAATAGTGTTTACATGATATAAATACATTTGCCATAATTTAAAATACGTATTATTTTGAAGCAATTCTAGAATAACAGAATGCAAGCTACCTATTCACCGTGGCTGGAATAAACAAGACAATTTTATCACTACTAACCTACTGTGACTTACTGTTAACGTAAAATTTGTTGAGCACTTGAATCCTCCGTGCCTCACAaaatacattgtatacattCATTTACAGTTGCTTTGACCTTTTGAGCTGTACAGAACCTCAACTGGAATGTTTCTGTTCCAGTGTGATCGAGGAAAAATGGACATTTCTGTTCTCCATACCAAcagaaaaaacataataaaccCTACTCCTAGAGGGTTAGGACAACAGGTTAGCACTTGCCAGCAATCCAACAGGTGAAGGCACACAATAATCGTTATCTTCTAGAATCTTTGTaagtttatacagtatgttgatgATACtataatttaaatgtattaatttatacTTGCTTAGACTATAATCCAAGTTATTATGTCAGTGATTTATTGGGATTGTACAGTATTTAGTCATGATCGAAGCCTCTTTGTGCCTACtgctcagtttttgtttttaaatatatgttttcCGTGTATTTGATGAGACTCTGTTcaattcattttcattatcaGTTGTCTAGCTTTTTTAAAATACTTGTTTTCATATAaagacatttaataaatgaataaagtaGAATAAGTTCTTGTAAATATA

Function

GO: NA

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97325 lncRNA upstream 29145 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 103067 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 132216 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 364012 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 600481 16494237 ~ 16494575 (+) True G72801
TU97549 lncRNA downstream 284591 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 320151 17427828 ~ 17463027 (+) True G73027
XR_005639682.1 lncRNA downstream 392912 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 816273 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 1007038 18114715 ~ 18116323 (+) True G73216
XM_039806226.1 mRNA upstream 1180 17079407 ~ 17093876 (+) True mrs2
XM_039806228.1 mRNA upstream 1180 17079407 ~ 17093876 (+) False mrs2
XM_039804920.1 mRNA upstream 29979 16995309 ~ 17065077 (+) True LOC120561713
XM_039806667.1 mRNA downstream 2199 17109876 ~ 17129613 (+) True LOC120562784
XM_039806669.1 mRNA downstream 2199 17109876 ~ 17129084 (+) False LOC120562784
XM_039806666.1 mRNA downstream 2404 17110081 ~ 17129084 (+) False LOC120562784
XM_039806677.1 mRNA downstream 42148 17149825 ~ 17162698 (+) False mrpl13
XM_039806676.1 mRNA downstream 44205 17151882 ~ 17162698 (+) True mrpl13
TU97163 other upstream 1022855 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1539104 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 2068403 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2464593 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2668876 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 261026 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 341908 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 348966 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 537836 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 643279 17750956 ~ 17779130 (+) False paqr7b

Expression Profile