RNA id: XM_039806431.1


Basic Information

Item Value
RNA id XM_039806431.1
length 9727
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC120562624
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19129524 ~ 19147793 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATCTCTTACCATGGACCTTGTGATGGCAGCTCTTACAGGCTTGTCACTGTGTTTCAAATCCTCCTACATGGATCATCATTTACCATACAGGAAGGCACAGTGAAGGGGTGTCCCTGTCATCTGGTGTGAACCAGGACAAATCGGAGGTCATTGTGATCCTGAGGAGAGACACTGGGATGGAGTCAGAGCTGGAGATAGAGATTGGTGTTACCATGGTGGCAGTCAAGGTCCCTCTCTGGTACTTAGGCAAATTGTGTGGTCTCTGTGGAAACCTAATGACCTTCACTCACACAATTCACTCAGGTCATGGGTTCTCCCTGACTTTCCTGACTGCCATGGGCACCATGTTGCTGCTTTGTGCTTTGGGGGCTTTACTCAGCTGTCCATCTAACGCTGGATGGGCAGGGAGGGAGTTCGCCCTGTCATTCATGCAGAATTATGCTCCAGACTACGACAGTCCTCGCTTTCAGCTATACATCACCGCTGTTCAGGCCAATGCTAAAGTGACAGTACAAGTGCCTCCTTTAAACTTCAAGCAAGAGAAAACTCTAAATGCTGGAGAAACAGTCACCATCAGTCTCCCAACCAGTGTTGAGATGTATGGCAGCCAGAAGTCTCCCAACACGGTGCGCATTGAAGCCTCAGCAGATGTGACTGTAACCTCTTTCAGTTCCAAGCTGTACACAGCAGACACCTCTGTGGTGTATCCCACCACTGAATGGGGTACAGAATATTTCATCTTTACACCTGCTGGGTCCCCCTATGGCTCATTTAAAGAGTTCTCTGTGACAAATGGGAAAGAGAGCAACAAAGTGGAGATTTTCCCACTCGGCCCCATCAGCTTCCAGGGTCGTGTGTATGAGAGTGGCAGCCGAATGCTGATAGATCTCCAGCCGTATGAGAGTGTCCAGCTCCAGAGCGTGTATGAACTCTCTGGCACCAGAGTTGCCTCCCAGCTTCCTGTTGCTGTTGTCACAGGTCACACTTGCACCTGGCGCTTCTCCAAATGTAACCATGTATATGAGCAGCTGCTGCCAGTTAGCAGGTGGGGATCCAGCTTTATCGTGCCTCCCCTGACTTTCCAGGATAGATATGACAGCGTCTTCCTCCTGGCCTCCCAGCCCACCCGAGCCACTGTCCAATACGGCAACCGTGAAGAGGTTTTGACTTTGACCAGGGGGCAGATAATAGAGGTCCGCTACCACAATCCCGAAACACTGTCCATTCAGGCTGATCATGGCATCCAGGTCCTCATGCTCTTCAACGGTGTCACACGGAGCTGGTTAAGCTTCTACGACCCTTTCTTGATGACAATTCTGCCCACAGACCGCTTCTGTTCCTCTTACTCACTTGAGGCTCTGGAGGGCTTTGAAAACCAAGCCCTGATTGTGGCACAGACCAGTGCGATGGCAGAGCTGCGTATTGATGGTACAAACCTGCCCCGTAATATTGAGTGGAAAAAGATTGCAGGGACAGATTTCTCTTGGGCAGAGATGCCCTACAAACAAAACCCTGGCAACAATAAACACACTGTCTCCAGCTCGGGTTCCCGCTTCGCTCTCTACAGTATAGGAGTCAGCCAGATGAATGGTTATGGTGCCCCAGGACAATGTATACAGCAAGGTAGTGGATCTTTGTCCTGCAGCAGTATTACCTGCAGTGCCAATGAGGTGTGTGAAGTGAAGAGTGGGTATCCCTCCTGTGTCCCCAAGGCAGTGGAAAAGAAGCCTGGTACCTGCTGGGCCATGGGAGATCCCCACTACCGCACCTTCGACGGGCGACACTACAACTTCATGGGTACCTGCACGTACGTCATTGCTAAAAACTGTGGGAAAGATGATAATCTCCCTGCCTTTGAGGTCCTCGCCCAAAATGAGAACAGAGGAAACCTCAGGGTGTCGTATGTCGCCGTGGTCACAGTGAAGGTGTATGGTGTTACCATCACAGTAGTTCGGTCTGAGACAGGCCGTGTGAGGATTGACAACAGTCTGTGGAGTTTGCCAGTAACCttgaacaacaacaaactgaCTATGTTTCAGAGCGGTCGCTCTGTGGTTATTGAGACTGATTTTGGCCTGACTGTCCGTTATGACTGGGAACACTATCTTGTGGTCACTCTGTCTGGCAGTTACGCTGGTAAGACTTGTGGTCTCTGTGGCAACTTCAATGACAACCCCAATGATGATTTCACCACACCCTCTGGCACCCAGGCAGGTGGGGCTGTGGCCTTTGGGAGCAGCTGGAAGGTTCCAGGGCTGGTGGAAGGTGCTCTGTGCAGAGATGACTGTGAGGGGGGGTGTGAGCGTTGTGAACATAGCCTAATGAAGATGTGGGAGGGTGACTTGTTTTGTGGGCTCATCACACTTATAATAAATGGGCCATTCAGCAAATGTCATGCCGTAATTGACCCACAAACATACCTGGAGAACTGTAAATATGATGTATGCATGGGAGGCGGCCTCCGACATTTCCTCTGCAGGGCACTGGAGGCTTACACTGAAGCTTGCCAGCTTGCTGGGATCGAAGTTCAAGATTGGAGGACGATGGCACGATGCCCATCTAAATGTCCCGCCAACAGCCACTATGAGCACTGTGGCAATGCCTGTCCTGTCACTTGTTCTGATCCTAATGCTCCCTCCAAATGCAAACGCCCCTGTGTGCAGACCTGCACCTGTAACGCAGGCTTTGTTTTGAGCGGAGGTCAGTGTGTGCCTGCCGCCAAGTGTGGTTGTGTCTATGAGGGTCGGAACATCCCTGCTGGGGAGTCATTCTGGGCTGACCAGGGCTGTCGGCGAAGGTGTGAATGCGTTGCTGGGAGCAGACACGTGGAGTGCCAGGATAAAGGCTGTGGAGCTGGGCAGCAGTGCCAGGTGGTTGAGGGCATAAGAAAGTGCCAGGCAGTCTCCCACAGCACCTGCCAGGCCACAGGTGACCCCCATTATGTGACCTTTGACAAGATGAAGTTTGACTTCCAGGGCACATGTGTGTACCAACTAGTTGCACTCTGCTCCAAGGACCCAGAGTTAGTACCCTTTGAAGTGCTGGTGCAGAATGATTACCGGGGCAGCAAGGTAGTCTCCTTCACCAAGTTAGTGGAGATCAAGGTGTACTCCCTCAGCATTGTCATTACGAAGACCCACAAGGGCCTGATTATGGTGAATAATGAGCTGGTCAACCTGCCTGTCACACTGGATGAAGGACTGGTATCTGTGTATAAGAGTGGCTGGTCCGCTGTGGTCACCACAAAGTTCGGCCTCAAAGTGTCCTTCAACTGGGAAAGCGCTGTGTACGTAACACTCCCAAGCAACTACATGGGAGCCGTTTGTGGCCTCTGTGGCAACTACAATGGCAAATCCCAGGATGACCTGATTCCAAAGAACGGTGACAAACCTGTCTCACCAGCAGATTTTGGGGTCAGCTGGCGAGTTGCAGAGATCCCAGGGTGTGTCGATGGCTGCAAAGGAGTGTGTCCTGATTGTGACATTACCCAGAAGGTTCAATATGAAAAAGGAGATTTCTGTGGTTTGTTGAGAGACCCCAAAGGGCCTTTCCGTGACTGCCATGCCAAGGTGGACCCAGCTGGCTACTTTGAAGActgtgtttatgatgtatgCTTGTATAAGGGCAGAAAGGATGTGCTGTGTCAGGCTATTACATCATACACATCTGCCTGCCAAGCTGTGGGGGCCAAGGTGTACAGCTGGAGAACCAGTCAGTTCTGTGCGGTGAAATGTTCAGTCCACAGCCACTATGAGATTTGTGCAACCGGCTGTCCAGCCTCGTGCCAAAGTCTGATCCCTCCTCAGGGATGCCAAGCTCAGTGTGAGGAGGGCTGTTCCTGTGATGAGGGGTACATACTCAGTGGAGATCACTGCGTTCCCTTCTCACAGTGCGGCTGCGTCTACAATGGCCGCTACTACCGCATGGGCCAAGTGTTTTATCCCAATGGGCAGTGTCAGGAGGAGTGCAAGTGCACACAAGATGGAGAGGTTGAGTGCAAGAAGTTCACGTGTGGCCCTAATGAGAAGTGTAAAGTGGAGAATGGTGTCCAAAAATGTCAGCCTGTTGGTAAGGGTGTGTGCCAGGCCTCTGGTGACCCCCATTACCTCTCTTTTGATGGACAAAGATTTGATTTCCAGGGCACCTGCACCTACACACTCTCCAAGAGCTGTGGGTTGGAAGGCACCCACCTGGTGGCCTTTTCTGTTCAGGTGGAGAACGTGAGGTGGAACATGATGATAAACAACAAAGTGGTGTCTGTCACCAAGCTGGTTGCTGTGGAGGTCTACGGCTACACTCTCATCTTAAGGAGCAACATGTTTGGAGTCCTGGTGAATGGAGTGTTTAACTACCTTCCTGTGAATCTTAATTCTGGAGCAGTGCTGGTCTATCAAGAAGGCATGCATTATGTTATTGAAACAGATTTTGGGCTGCGTGTCACCTACGATCTGGTCTATCACGTGACAGTCACAGTACCGGGTAATTATCGTGATAAGGTCTGTGGCCTGTGTGGCAACTTCAACGGTAACCAAAAAGATGACTTCCAAATGCCCAACCGTCAGCTCACCAACAATGTGAATGTGTTTGGAAAATCGTGGAGGATCACCATCCCTAATGTAGTGTGTGAGGATGGCTGTGAAGGGAATAAATGTCCTGTTTGTGACCCGGCTCGCAAGGCTGTGTTTTCAAAGTCCACTTACTGTGGCATTGTTACAGCACCCAACGGTCCTTTTGCAGCCTGCCATAGTATACTGGACCCACAGCCGTATTTTGCTGACTGTGTCTTTGATGTATGTGCTTCCAACGGCGATGGGAAGGTGCTGTGTAACAGCGTAGCAGCCTATACCTTAAACTGTCACATGGCAGGAGTGGACGTGAAAAACTGGAGGACAGCTTCCTTCTGTCCAATGAAATGCCCAGCCAACAGTCACTATGAGGTGTGTGCAGATGCCTGCTCTGCAACCTGTGCAGGCCTCACAGATATTGTACAGTGCTCTAGCAGCTGTATAGAAGGCTGTGAGTGTGATGCTGGCTTTTTATTCAACGGACATGCGTGTGTTCAAGAGACTGGGTGTGGCTGCTATGACAATGGAAGAACGTACAAGCCTGGTGAAGTAGTGTATGAGGAAGACTGTAACACAAAGTGCACCTGCAATCCAGCGACAGGCCTAAACTGTGAAAAGCATTCCTGCCCTGAAAGCACCAAATGCATGGTCAAGAAAGGAATCAGGGCATGCTACAACACAGATCCCTGCAAAGATGCCAAGTGCCGGGTCAAAGAGAAGTGCCATGTTGAGAAGGgtgaagctgtgtgtgtccCCGAGTACACAGGCATATGCTGGGCCTGGGGTGACCCCCACTACCACACATTTGATGGTTACAACTTTAACTTCCAGGGCACCTGCAAGTATGTCATCTCCAAGACCTGCGGGAACCTGGAGGGTCTAGTGCCGTTCACAGTCACTGAGAGGAATGATAACCGGGGAAACACAGTAGTTTCTTACGTCAGGGAAGtagatgtgtctgtgtatggGTACAACATTACCATCCGCAAGAACCAAGTTGGTCGAGTGATGGTGGACGGGGAGCTGTTAAATCTTCCTGTACAAATCTATGATGGTAATGGTGAGGTTGAAGTGTCAGTGTTTCAGCGTGGTTACACTGCCGTGGTGGAGACAAATTTTGGCCTGGTCGTCTCCTACGACTGGAACTGGGAGCTGGTCATCAAACTGCCCAGCAGCTACTACGGCAGTGTCTGTGGTCTCTGTGGCAACTTCAACGGTAACTACCGCGATGAGCTCCAAAATCCAGCCGGAATAGCTGTCTCCTCAGTGATAGAGTGGGGCAAGAGCTGGCAAACGCCTGACCAGGACAAGGACCATCCTTGCTGGGACACATGTAAGGAAAACTGTCCTACCTGTGACGATAACCAGAGTAAACTCTATGAGACTGAGGCTTTCTGTGGGGGCCTTGTTGCTAAGACCAATAATGTGTTCAAGAAATGTCATGAAAAACTGGACCCCCAGGCCTTCATGGACAGCTGCGTGTATGATATGTGTTTGAATAAGGGAGACAAAAAGATGCTGTGCCAGGCATTGGCCTCCTACAGTCAGCATTGTCGTGAGGAAGGAATAATAATCAAGGACTGGAGGAAAACGTTTGGCTGCCCAATGAGCTGTCAGCGTCACAGCCACTATGAAGACTGTGCCAGCCCATGCCAGCCATCCTGCCCATTCCCTGAGCAAATTAAAACCTGCAACGGTGTCTGTGTGGAGACATGCGTGTGTGATCAGGGTTACGTCCTCAGCGCTGGTGTCTGTGTGCCTGCTAAAACATGTGGTTGCTCCTATCAGGGCCGTTACTATAAGCCAGGCCAGCACTTTTGGGCTGATGAGGCTTGCGGTCGCCTGTGTGAGTGTGATACGACCCTGGGCATGGTGACATGTCGCGAGGCTTCCTGCTCTGCCAAGGAGACGTGCAACTTAGTGGATGGAGAGCGTGCCTGCCGACCCATCAGTCATGCCACATGCACAGCCTCAGGTGACCCACACTACCGGAGTTTTGATGGCCACAGGTACAACTTCCAGGGCACATGTGTATATCAGCTGGTGGGACTGTGCTCGCAGCAGCCCGGACTAGTGCCTTTCAAGGTGACCGTGCAGAACGACCACCGGGGAAGCAAGGCCGTGTCCTACACAAGGACTGTCACCTTTTCCATATATGACATCACCCTTACCATTAGCAGAGAATACCCCTACAAGGTCCTGCTCAATGGGCAGCTTGCTTCGTTACCACTGGATTACAATAATGAGCTGGTCGTGTTTCTCAGCGGCTGGACAGCTGTAGTGGAAACAGTCGCTGGTATCACCGTGACCTTTGATTGGCAGAGCACAGTGAGCGTTACTCTGCCCAGCAACTACCAGGGCGCAGTCTGCGGCCTGTGCGGCAACTACAATGGAAAAGCTCAGGATGACCTGACCATGCGGAACGGCCAGACCGCCACAAATGGAGCCACGCTGGGGGAGAGCTGGCAGGTGGCCCTCGTACCAGGCTGCTCATCAGTCTGCCAGGGGGCATGGTGCCAGGCCTGTTCAGACTCCCAGAGGAAAGAGTACCAAGCCCAGAAGTACTGTGGTATTATCGCTGACAAAGCAGGGCCTTTCAGAGATTGTCACGGACGTGTGGATCCTGCTCCTTACCTGGAGGACTGTGTGTATGACGCCTGTCATTATCATGGTCACCATGGAGCAGTGTGTGATGCTGTGGGAGTCTatgtctctgcctgtctgagCCAAGGAATCACCATCCGTTCCTGGAGAACAGATAGCTTTTGTCCAATGGTGTGTCCAGCTAACAGCCATTATACCCTGTGTGCTGTTGGCTGCCCAGCCACCTGTGCCAGCTTAACTTCCCTTGCAAGCTGCCACAGGTCCTGCACAGAGGCCTGCGAGTGTGACGAAGGCTACCTGTTGAGTGGGGATACCTGCGTGCCCGTGAGAGACTGTGGCTGCTCCTACAATGGCCACTACTACAGGAAAGGAGACGTCTTCTACCCTGAAACAGAGTGTGTGGAGCAATGCATGTGTGGAGAGAATGGCGCTGTGTCTTGTCAAAAGGCCAAGTGCCGTGCAGGGGAGACCTGTAAGCTTGTTAATGGAGTGAAAGGCTGCCACCCTGAGGGGCAGGGCAAGTGTGTTGCTTCTGGTGATCCTCATTACATTTCCTTTGATGGACGGAGGTTTGATTTCCAGGGTACCTGTGTCTATGTGTTGGCCAAGGTTTGTGATGATGACAATGGCCAGCTGACTCCATTCAGCGTAACTCAGGGCAATGAGAAGTATGGAAATGGAAAAGTGGCTGTTACCAAGTCCGTTGCAGTGGCAGTCTACGGTTATGTTGTTTACATCCAGCAGAAAGTGCCATGGAAAGTCATTGTGGATGATGAACTTCTaaaccttcctctctccctggACAACGGGCGTCTCAGAGTCACCCAGGAAGGTAGCAACATAATTGTCCGGACAGACTTTGGACTGACAGTCCTGTATGACACGGTCTACTATGTTGAGGTGATCGTGCCTTCTACATACCAGGGAAAGATGTGCGGTCTCTGCGGCAACTACAACAAGAATGGCGGCGACGACTTTATACTTCCCGGCGGCAAAAACACGAACAGCGTCGACGACTTTGGGAAGGCGTGGGTGGTGGAACTGCCTGGCAATGTTTGTGGGGGCTGTGGAGGCCAGTGTCCAGTATGTGAGCAGGCCAAGGCTGCTTTGTACGGAAAAGCAGACTCCTGTGGCATCATAAGTGCACCTAATGGACCTTTCAAAGCCTGCCACAGTAAAATTGACCCAGTGGCATTTGTGTCTCATTGTGTGTTTGATGTTTGTGCTGCGGGTGGCGACAAAGATAGTCTGTGTAACAGTGTCCAGGCCTATGCTATGGCCTGCCAGAGTGAAGGAGTGCAAATCCAGCCATGGAGGAGCAACTCTTTCTGTCCTGCTTCCTGCCCTGCACACAGTCACTATGAGGTGTGTGCCGACACCTGTAGTGGGACCTGTGCCAGCTTTATTTACCCATTTACTTGCTCTGAAAGCTGTTTTGAAGGATGCCAATGTGATGACGGCTTTGTTTTCGATGGCATCCAATGCGTTCCCTTGGACAACTGTGGATGTGTGCACAATAGCAGATATCTGACGGTGGGCCAAGCAGTTGTGGACAAAGCCTGCGTGTCCAAGTGTGTGTGCCAGGCCTCTGGGCTGGTAAAGTGTGAAAAGCTTTCCTGTGCCAGTGGGGAGGTTTGTGGTGCAAGAGATGGCGTCAGAGGTTGCCACGTCAAACGGGGCCATTGCGGCGTCAGCCAAGTCGGCCACTTCACCTCCTTTGATGGCATGTCCGGATTGATAGGAGCGCAAGGGGCATTTGAAGTGGCGTCTCTGTGCGACGAGACCGACAAGCTGTGGTTCCGTGTGGTTGTGGATGTCAGGGTCTGCAGCAAAGGTGCATCTCCCACTGTCGCCACTGTGTATGTGTTCTTCAAGGAAACCGCCATCGCAGTGAACAGCCAACACGTGACCTGGGTAAATGGCAGAAAAGTGTCTCTTCCCAGCAAAGTGACGAGTGAGATATCcgtccaaatctcagagaagaCTGTGATCATCGAGAGGGCATCTGCTGTGCGGGTCACTTACTCAATTTCACAGGAGGTCACTGTCATTATTGACAGTAGCCTGTCCGGTAAAATGTGCGGCGCCTGCGGCAACTACAATAACGACTCCAAAGATGATATGAGGACTGCAGATGGGAAAATCACCACTGACGTGTCCGTGGTTGTTGGCTCCTGGAGCGCTGGGGACTTTTCTAAATGtGGCCTGTAGAGATGTTGGTTCTGCTGTGATAGAAAGCATCTGGTGTACAGGATGAAGAATGTGAAGTCTTACTCATCATACTTCAATGCTTCCTCTTGATTTGTggaattgtttttgttgtttactgGCAGTCTGCTCCTCTATTGTTCACTTTGGAATGGTAGAGAAATGTACCTCATTCTTGGGCAACATCTCCATCTAGTGGAGGAGGAAATTATTGCATCTCTTTTCCACAGAACAACCAAGAGCAATACCTGTCTTATTATGCTGTATTTtcttagtttaaaaaaagttgtttaacaaaatgtgttttccttACTTTTCCAACCAATAAATACTTCTTCATAACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98334 lncRNA upstream 3746 19125156 ~ 19125848 (+) True G73568
TU98243 lncRNA upstream 197421 18911394 ~ 18932173 (+) True G73501
TU98239 lncRNA upstream 218378 18908503 ~ 18911216 (+) True G73499
TU98232 lncRNA upstream 255637 18872374 ~ 18873957 (+) True G73493
TU98215 lncRNA upstream 267756 18860328 ~ 18861838 (+) False kmt2bb
XR_005639800.1 lncRNA downstream 728 19148521 ~ 19158369 (+) False LOC120562630
XR_005639799.1 lncRNA downstream 730 19148523 ~ 19158369 (+) True LOC120562630
TU98341 lncRNA downstream 820 19148613 ~ 19158995 (+) False G73570
TU98342 lncRNA downstream 820 19148613 ~ 19158995 (+) False G73570
XR_005639798.1 lncRNA downstream 10682 19158475 ~ 19159018 (+) True LOC120562629
XM_039805285.1 mRNA upstream 8893 19116593 ~ 19120701 (+) True LOC120561940
XM_039806433.1 mRNA upstream 28520 19095468 ~ 19101074 (+) True fxyd5
XM_039805284.1 mRNA upstream 39635 19021154 ~ 19089959 (+) True nphs1
XM_039805431.1 mRNA upstream 173557 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805423.1 mRNA upstream 267636 18833245 ~ 18861958 (+) False kmt2bb
XM_039804865.1 mRNA downstream 42286 19190079 ~ 19192102 (+) True hcst
XM_039804867.1 mRNA downstream 42307 19190100 ~ 19192102 (+) False hcst
XM_039804866.1 mRNA downstream 42308 19190101 ~ 19192102 (+) False hcst
XM_039806478.1 mRNA downstream 45682 19193475 ~ 19194806 (+) True LOC120562651
XM_039806917.1 mRNA downstream 50727 19198520 ~ 19204699 (+) True LOC120562955
TU98057 other upstream 382919 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 475957 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 492287 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 820 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 820 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 499182 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1860240 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2255334 21403127 ~ 21404603 (+) False crot

Expression Profile