RNA id: XM_039806433.1


Basic Information

Item Value
RNA id XM_039806433.1
length 1125
RNA type mRNA
GC content 0.47
exon number 10
gene id fxyd5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19095468 ~ 19101074 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAAAGTAGGAAGACAAGCTGCTGTGCTGAGATGGCTGAACTGCAGACAGAGATCAcagcagagtgagagagagtgaaagtcTGGACGCCAAAGAACAAGAAGGAGGAGGCCATGTCATGAGAGAGTGGGTGAGCGAGAGACTGAAAGACTGAAACACAGTTCAGGCAATTGGATGAGGAAGTAGTGATGGTGAGTACATGGGTGTGGTTGCTTAGCAGTTAGCCCATCAGCCTTTCAGAAGTGACATACAGAGGAAAAAAGCACTGGATAATGAGGCCGTGGATGAATCTCTGGACTCAGGCACCTCACAGGATGGATACTAAGatgtATTTGACTTCCTTGACCTTCTTCCTGCTCGTCATGTCAAAAGTGTCAAGGGCTCAGACTCCCACAACTGTGGATCAAATGCAATCTGTGAGCAACATGGCAAACTCAACAATGCCCGCTGCTCTGACTCCCACTGGAAGAAGAGCGGAAAGCAGAGTCACCAGAGGTGCTGACTCCTCCCCGGAAAGTCTCCCTGCTGAACAAaccacaagcaaacacattagCACCAGCAACCCTGTCTATGTCAACACCACCACATCAGAAATTAAGAATTCAACAGCTCCCAATAAGGGAACAACAAAACCGCAAACAAAGCGCACCCCTCCTCCAGGATCTACACTGACATCCTCCCCATCCAGTACTAAGAGACCCACCATAGTTGCCTGGGATCGAACTTGGGATGAACATTTCACCTATGaTTATGAGTCCCTGCGCTATGCTGGACTGACCATTGCAGCAGTACTTTTCATTGTGGGCATCATGGTTGTTGGCTGTGGCAGGGTCTGTCGGCTGCCTAGCTGTCGCAAGAAGTCCTCTAAAACATATCGAGTGGTCCAAGgataaggagagagagagcatgcaGACATTGATAAAAGTACAGAGCTGCAAGAATCCAACCAGGAGTTCATCAAGGGAAAAACACTCAACCACAACCTGGCAGCATGTGTGTGAAtctggactgactgactgtaTGCTGCTTGGTAACAGTGTCATATACTGTAGAAAAACACTGAATAAACATAGAAAACGTGAATCATTCTGACGAGTGGAAAAAACCTAGAACAATCACACGCTT

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98243 lncRNA upstream 163295 18911394 ~ 18932173 (+) True G73501
TU98239 lncRNA upstream 184252 18908503 ~ 18911216 (+) True G73499
TU98232 lncRNA upstream 221511 18872374 ~ 18873957 (+) True G73493
TU98215 lncRNA upstream 233630 18860328 ~ 18861838 (+) False kmt2bb
TU98224 lncRNA upstream 266780 18826582 ~ 18828688 (+) False proser3
TU98334 lncRNA downstream 24082 19125156 ~ 19125848 (+) True G73568
XR_005639800.1 lncRNA downstream 47447 19148521 ~ 19158369 (+) False LOC120562630
XR_005639799.1 lncRNA downstream 47449 19148523 ~ 19158369 (+) True LOC120562630
TU98341 lncRNA downstream 47539 19148613 ~ 19158995 (+) False G73570
TU98342 lncRNA downstream 47539 19148613 ~ 19158995 (+) False G73570
XM_039805284.1 mRNA upstream 5509 19021154 ~ 19089959 (+) True nphs1
XM_039805431.1 mRNA upstream 139431 18934230 ~ 18956037 (+) True zmp:0000001114
XM_039805421.1 mRNA upstream 233510 18833245 ~ 18861958 (+) True kmt2bb
XM_039805423.1 mRNA upstream 233510 18833245 ~ 18861958 (+) False kmt2bb
XM_039805436.1 mRNA upstream 268844 18819201 ~ 18826624 (+) True proser3
XM_039805285.1 mRNA downstream 15519 19116593 ~ 19120701 (+) True LOC120561940
XM_039806430.1 mRNA downstream 28450 19129524 ~ 19147793 (+) False LOC120562624
XM_039806431.1 mRNA downstream 28520 19129594 ~ 19147793 (+) False LOC120562624
XM_039806432.1 mRNA downstream 30417 19131491 ~ 19147793 (+) True LOC120562624
XM_039804865.1 mRNA downstream 89005 19190079 ~ 19192102 (+) True hcst
TU98057 other upstream 348793 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 441831 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 458161 18632402 ~ 18637307 (+) True LOC120562796
TU98340 other downstream 47539 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 47539 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 545901 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1906959 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2302053 21403127 ~ 21404603 (+) False crot

Expression Profile