RNA id: XM_039806443.1


Basic Information

Item Value
RNA id XM_039806443.1
length 2046
RNA type mRNA
GC content 0.43
exon number 2
gene id cdc42ep5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23004372 ~ 23007320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGCCCATCcctttggaaaaaaagaaaattcacaCAGGCAAACGACGGCGAGAAAAAGAGCGAGGGAAAAGTCGGGAGGGAAGCAAAAGTCAAAAAGCCAGATGAAAAAGTTGGATACTGCGGAGCGAGTCAACCAAAGACCAGAATATTCTCTTTAAATCATGCCGCTGCATAAATCTACCCGGGCACCTCGCCTGGACCCTACCATGATCTCAGCCCCACTGGGCGACTTTCGCCACACCATGCACATTGGGAGGGGAGGCGATGCCTTTGGGGACACCTCCTTCCTGTCCACTCTTGGGCCGAGCCCAGCCAGCCCTGACCCTGAGAGTCCAGGGATGATGCCAGCTGCTGAACCTCAGGTGGCAGTCAACCACAGTGATCTTTATTCAGATGCTCCAGGAAGCCCACAGAACAATGAGCTTCAGCACTCTGAGTCAGTGTCTTCATTCGACCTGGACCTGGATCTAGGCCCGTCTATGCTGGGGGATGTACTAGGGGTGATGGACGGTTTGGGGCTTGACTCCAATGAGGAGGATGTGTTCAATCCCAAAAGTGGCACATCCTTGGTGGAGACAAAGCAGGGAAAAGGGGCCGTGGAGATGACTGTGAACAAACAGAACGAGCTGAATGGAAAGAACTTGGGTGGGTTGGATGGAAACCAGGTGGGAGACAGCAGGATAACAGATGGGAATGGGATCAAGCCAAAGGGGTTAAGACCAAAAGTGCGATTCAGCGATAAACGAGAAGAGATAATTCGCCAAGCATCTGAAGAGGAAGAGGGTCAAGGGTTCAACTTCCAGGATGAGGATCAGCTGGGGTGTCATAGTCCAACAAGGGGTAAGATTGAGAGCGTAGTAGGTGGAGGTGAAACCGAGTTCACCAATCACAAAGTAGATTTGCCACCTAGTCCGGACTCGTCACATAGCTCAGAGTATGAAGGAGTCACCCTATTGGACAGGAGGAGGGTCGACAGCTGCCACTCAGAGACTGattcagaagaagaggaggaaggacgAGGCTACACATTTGAAGATGAGTTTGATGATGAAATTGGTCTATAGGGGATAGGTACAGTTTCCCCTTGAAAACAGATCATTGCTGTCAAGTAAatcagatatactgtatttcttaAACTCATCATCTCTGTATCATTTGAATGGGAGGCTTAAACAGAATGcaaactggatttttttttttttaaatgtacagttCGACGACGTTGCTCAACTGGAAAagacattttatgttttatctGTAAGGGTAGCAGATTTGTAATAGACTGTCATTTTCCTCAGCGAAATCAGTATGTCATTGGGGTTCTTACAGTGAAAGGTTTGTAGCACTTTGATTTATTTCATTGACCTGGAAGCTTTGCTATGAAACAGACTAAATTAATGATGCTTGCGTTCATTTCTTATATTTACCATCTGAAGCGCACACAACAGGTGTTACAGCTTTATGTTATAGTGCCTTAAGGAGAGCTGTATGCTTACACTATTGTACCATGTGCTATATCAATGTCTTAATTATTTCTCATATTGCATGTTTATTACAATCTCATTAGAATGTCTTCTCTTGATGTTTAATGCATTTGACGAGCTTTACAAATGATTCTTAAGAGACTTTGTCAGAAAATAAAGTCATCCTGTGTTTAATTATTTACTGTGAATTTGTCACATTCCAAATCTGACAGTGTTGAGTTTCTCTGGTTCAGATCTGTTTAACAATCCGTTTTCTTAATGCAGTTATTTAGCATGTTTTCAACTTACCAAAGCTTTTCTTTGGGCTGTGGGGCTGGACTAATACTGCAATGCTAAGACAATCGTGGGTTTCAAAAGGTCAACTGTAAATCAGgaccagctgttttttttttttttttgcttgtatAATGCTTGTATTTTGACAAAATATTTCAGAATGCTATAAAAGGGAGAGGCCATTACCCTCATGAAAATGCTGGTTTAAACACATTTGTTATCCTGTGGTTTGATAAGGAttacagtggaaaaaaaaataaaacaattgggattttgaaatattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100410 lncRNA upstream 9666 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 17050 22982892 ~ 22987322 (+) True G75065
TU100379 lncRNA upstream 79217 22924592 ~ 22925155 (+) True G75045
TU100374 lncRNA upstream 84269 22918752 ~ 22920103 (+) True G75042
TU100087 lncRNA upstream 184319 22814044 ~ 22820053 (+) False myh14
TU100419 lncRNA downstream 9487 23016807 ~ 23018595 (+) True G75077
TU100360 lncRNA downstream 72492 23079812 ~ 23083139 (+) False LOC120562293
TU100533 lncRNA downstream 136622 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 320922 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 324520 23331840 ~ 23332756 (+) True LOC120561704
XM_039807055.1 mRNA upstream 21593 22968438 ~ 22982779 (+) True rbfox1l
XM_039807056.1 mRNA upstream 21593 22972645 ~ 22982779 (+) False rbfox1l
XM_039804760.1 mRNA upstream 92852 22900089 ~ 22911520 (+) True cnot3a
XM_039806044.1 mRNA upstream 105503 22893099 ~ 22898869 (+) True tfpt
XM_039806043.1 mRNA upstream 116494 22878031 ~ 22887878 (+) True zgc:158689
XM_039805889.1 mRNA downstream 21398 23028718 ~ 23036069 (+) True leng9
XM_039805890.1 mRNA downstream 21398 23028718 ~ 23036069 (+) False leng9
XM_039805892.1 mRNA downstream 21794 23029114 ~ 23036069 (+) False leng9
XM_039805891.1 mRNA downstream 21927 23029247 ~ 23036069 (+) False leng9
XM_039805947.1 mRNA downstream 29579 23036899 ~ 23058964 (+) False ttyh1
TU100365 other upstream 102324 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 184319 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 336828 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 381288 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 483805 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 756995 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 759865 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 760913 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 866596 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile