RNA id: XR_005639804.1


Basic Information

Item Value
RNA id XR_005639804.1
length 3332
RNA type transcript
GC content 0.47
exon number 16
gene id celf3b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22559944 ~ 22585572 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagtagAGGAGATACCGGCATTGGACGTGAAAGCCATCCAGCCGTTGGACGGGGGAGACGCAACAAGAAAATAGCAAGAATAGTTACGTTAAGTAGGAATAGCCTCGATTAATGATTGGAACAATAACGGCAAGGCTGCAAAAGTCTCAAGAGACCAAGCAAGTTTAAACTGTTGTATGTTACCCGAATTTAAGCGGCTGGATGGTCTGTTATCACTTTGTTATGAGATAAGAATTAGAGTAGGTTTTGGTGAAAGTGAaaactaactaacgttagcaagCTCCTTCCACTCTGGATTTTGAGGTTCGAGAGGTTGACTAGCTACATTTCAGCGGGACCGGTGACAAGCTGTGATTTGGACTCACCTGCTAACGTTAATAGGACTTTACTTCGCCACCTCCAGACCGGGAACACCGGGTTTTTGTAAAAACACAGCCGAGCCTCTAGTATCTATAcaccgaggaggaggagggaaggcaCAAAGAGCGAAGAGCAtccagagagaggggaggaactTGGAGGACGGGACAGAGAGAGCGCGGTGAGGACAACAACGGGGACCCAACAGAGAGCATCCCTCTTTAATTTCTGATCTGCACAGGCAACACTCTGCCCATAAGCAATAAACGGGTTCCTGAACGCTGTTTATCCACCAAAAGGGTTACCTGCTCCTGATCTGTTTGCCCCTCAGCCCCTGCAGTACCCAGTCCTCCTCTCCACTGTGTCCTGATGAAGGAGGCAGACGCCATCAAGCTGTTCGTAGGGCAGATTCCTCGGAATCTGGAAGAGAAGGACCTTAAGCCTATCTTCGAGCAGTTTGGCAAAATCTATGAGCTAACTGTGATAAAGGACAAATACACTGGCATGCACAAAGGATGTGCGTTTCTGACGTACTGTGCGAGAGAGTCGGCACTGAAAGCCCAGAGCGCTCTACACGAGCAGAAAACACTACCAGGGATGAACCGGCCAATCCAGGTTAAACCAGCTGACAGCGAGGGTAGAGGAGTTGGTCTCTCAGAGGACAGGAAATTGTTTgtgggcatgctgggaaagCAACAGAGTGATGAGGACGTCAGAAGACTTTTTGAACCCTTTGGCAGCATAGATGAGTGTACTGTGTTGAGAGGGCCCGACGGCACCAGTAAAGGGTGCGCTTTTGTAAAATTCCAAGGACATGCTGAAGCCCAGGCTGCCATCAACAGCTTGCATGGAAGCCGCACAATGCCTGGAGCGTCGTCCAGTCTGGTGGTGAAGTTTGCCGACACAGAGAAGGAGCGGGGGCTGAGGAGGATGCAGCAGGTGGCCTCCCAGCTCGGCATATTTAGCCCCATGACCCTCAACTTCCCCGCCTACAATGCCTACACACAGGCGGTCAACGCACAGCTTGTCCAACAGCAGGCCTTGGTTGCCCAGTCAGCGTACTTGTCTCCTGTGGCAACAGTTGCCGCCGTACAGATGCAGCAGATGGCGGCGCTCAATGCCAATGGAATCATTGCCACACCCATTACATCCATCACGCCGTCCTCGGGTACAAACACTCCACCAACTATGGCGGCAACGCCTGTGCCATCTCTCCCTCCGCCACTAGGAGTGAATGGTTACAGCAGTCTGCCAGCCCCGACCAATGGACAACAAGCAACAGAAGCGCTATACACCAATGGCGTTCACCCATATCAAGCTCAGAGCCCAGCAGCAGCCCTGGACCCCCTACAGCAGGCGTATGCAGGCATGCAACACTACACAGGTTGGTCGGCGTACCCTGCTGCCTACGGATTAGTCGGACAGCCATTCCCCCAGCAGCCAACACTGGTTGCCCAGCAACACCAGCAGccccagcaacagcagcagagagaaggtccAGAGGGCTGTAACATCTTCATCTACCACCTGCCTCAAGAGTTCAGTGACTCTGAGATGCTGCAGATGTTCCTGCCCTTTGGCAATGTCATTTCGGCTAAGGTGTTTGTTGACCGTGCCACCAATCAGAGCAAATGCTTCGGATTTGTGAGTTTTGACAACCCAGCCAGTGCTCAGGCTGCCATCCAGGCCATGAATGGCTTCCAGATCGGCATGAAAAGACTGAAAGTGCAGCTCAAACGGCCCAAAGATGCCAACCGCCCATACTGAGTGAcaacagaggaggaagaagaaacaaAGAGAGATCCTTCCGTCCAATCATAATTCACGAGGACCCCATCGCTATGGCAATGGTTGCCTAGTGACCGATAAAGCCCTGACCCCCCCTTCCTCTCGCATTGTTGTGACCTTTCAGAGTCCAGCCGATGTGGAATCCCAGGGTTCATAGTGCTTTCAGACTGTCTGCTACCTTTGAGTGTCCGGGGAGTGCagccacacacactgacacacactcacacgaaTACACATGCGCTCTCAACACTGAACCTCGAACGGTACAAGGCTGATATACAAATGTACATAaagtgcacaaacacacacgcctgcagacactcacacaaaacacacacggtTCACACAAGTCAGTAATCTTACCCATACAGCCAAGGGCTTGGTTTGACCACGGTCTATGTGGAGTTTGCCAACAGGGTGTTTAGTAGAGTTACTGTAAGATAACTCAGACCAAGCATGTATGGAGGGTACTGATGAAAAATGCTGATATATCACTTCAATAGACTTTAACATGTCTGTACCATGTCTATTCCATGACAAATATAGAGGGGCCGATGtttcataataaaaaaagaaagaaaatacaaaaatatgtctAAATGAGTAGGTTAGAGAGACTTTGGAGAAAATCCTAATGACCTGTAAATAATTTAGTTTACAAAGAgcagcatttaaaaaacaagaaaaaatgcaaaaagaatACTACTTTAGATAAACACCTAACAGGACACAgcgacattattattattatgattatgattattattattattaccactagtaacatcatcatcctcataAAGGGATATTACATTCCAAATTGTAAAATGGGAAATCACTAACCTATTTTAAATTTCTACTTAGATTTTAGGTGAAActcgggggagggggggttgcaCTTTTATTCGGGAGGTTTTAATATTTgagctattttttatttatttactaatttatcaattattttgtttattgGGAGACGGGGTTGGAGTGGGTTGCAATATTTTGATTTTAGAATTTTCTAGAGAAAACCTTTTAAGGGCCTGTTTCTGTCAGACTCTTGCAATCGAGTAATTATAATGTATGTATTAATTATTACAGcaattatatttatttctaaTTTATTGAATCCTGTTTTTGATCCACTCTCTTtttaagttaaaataaaaagtatcaTACTAAATGTC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 247430 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 304467 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 314182 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 316912 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 375908 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 37643 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 119300 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 228472 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 333180 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 339020 22924592 ~ 22925155 (+) True G75045
XM_039806780.1 mRNA upstream 3653 22519118 ~ 22556292 (+) True adamtsl4
XM_039806779.1 mRNA upstream 53448 22490753 ~ 22506497 (+) True tars2
XM_039806774.1 mRNA upstream 71227 22469978 ~ 22488718 (+) True rprd2b
XM_039806777.1 mRNA upstream 71227 22469978 ~ 22488718 (+) False rprd2b
XM_039806776.1 mRNA upstream 71227 22469978 ~ 22488718 (+) False rprd2b
XM_039807301.1 mRNA downstream 3555 22589127 ~ 22606928 (+) True cers2b
XM_039805306.1 mRNA downstream 24446 22610018 ~ 22623078 (+) False arnt
XM_039805307.1 mRNA downstream 41775 22627347 ~ 22627532 (+) True LOC120561960
XM_039807302.1 mRNA downstream 44045 22629617 ~ 22643078 (+) False setdb1b
XM_039807304.1 mRNA downstream 44045 22629617 ~ 22643078 (+) False setdb1b
XR_005639857.1 other upstream 70001 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other upstream 71227 22469978 ~ 22488718 (+) False rprd2b
XR_005639675.1 other upstream 253793 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 271651 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 360127 22197794 ~ 22199818 (+) False kcnn3
TU100045 other downstream 31400 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 31400 22616972 ~ 22623084 (+) False arnt
TU100065 other downstream 74907 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 228472 22814044 ~ 22820053 (+) False myh14
TU100365 other downstream 314572 22900144 ~ 22902048 (+) False cnot3a

Expression Profile