RNA id: XM_039806471.1


Basic Information

Item Value
RNA id XM_039806471.1
length 1163
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120562646
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33922578 ~ 33935943 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAACTGTCATTGTGAAATTAGTTGCCATAGATGGCCACTGATGGATCAATCTACAGGGTGTGTGTAATCAGATTGATTAATCAGTGCCCATCTATGGAAAGGCAGATGGTGGTTATAAGTAAGTAGATTTTGTAGCCATCTCTAACAGATGGTTCAACTGTCAAAAGAATAGACATGGCAGACTACATCAATTCACAAGTAACTGGAGAGAGGAGTATTTtggagaagagagaaaatgtCCATTCAGGAGGGTCAAAAGTCTACAGGGTTGTCGGTGTCAGCTTCGGTCTGCTCTGCATCATTCAGTCTGCTCTCAATATTTCTCTTTGGCTCCATCGAATTGGATGTAACGACCAGATCGGAGATTTTGAGATGTTGAAGGACCAGCTCGTCCAACAACAAGATCAGATAATGAAGCTTCAAACTGAAAGAGAGAGCCTGAAAATGAGGCTTTGTGAAATGGAACAAAAACCCCAAGGCTGTCCGCAGGGATGGAGGCTATACATGTCCAGCTGTTACTATGTTTCTACTGTGACAAAGACCTGGCAGAATGCCCAGTTCGACTGTGAGGCGAGAGGAGCTCACCTCGTGGTTTTAAATGATACAAAGGAAGAGGATGCTGTCCGTGGTTTTGGAAGTCAAGTCGCGTGGATCGGCTTGAGGGCTCAACGAAATGTTCGGTTGGATTCGTGGACGTGGGTGGACGGAAGCAAAGTGACTAATACTGACAGGATTCGGCAGCCAGTTGATCAGCGTTTGAACTGCACCTATACCGGCACTATGAAGTGGGTCCTTTCCGACTGCAATGAACAACACTACTGGGATGGTCAAAAGTCTACATGGCTGTCGGAGTCAGTGTGGGCCTGCTGTGCATCATGCAGTTcactctcaatgttttatttcgaCTTCAAGCCGTTGGGTGTTCTGTCGGGTCCTACAACGTCTCCACTGGCAACGCCACCATGATGTCAGATAGTGACATCAGAGTCCTGATTTTAGAGAGAGACCAACTGGTTCGAGAGAGAGACCAACTGGTTCGAGAGAGAGACCAACTGCTTCGAAAGACAGACCAACTGGATCGAGAGAAAGACAAACTGGTTCGAGAGAGAGATCAATGTGATCAAGAGAGACAACGATGTGTTCCAAAGGCGGACTTtggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104275 lncRNA upstream 334327 33564020 ~ 33588256 (+) True G78000
XR_005639668.1 lncRNA upstream 334491 33583805 ~ 33588092 (+) True LOC120561935
TU104277 lncRNA upstream 404068 33515709 ~ 33518515 (+) True G78002
TU104276 lncRNA upstream 428923 33493424 ~ 33493660 (+) True G78001
TU104267 lncRNA upstream 462348 33460022 ~ 33460235 (+) True G77993
TU104336 lncRNA downstream 2316 33938259 ~ 33938468 (+) True G78054
TU104337 lncRNA downstream 14830 33950773 ~ 33951005 (+) True G78055
TU104416 lncRNA downstream 26851 33962794 ~ 33963092 (+) True G78117
XR_005639657.1 lncRNA downstream 48906 33984849 ~ 33987987 (+) True LOC120561795
TU104431 lncRNA downstream 102898 34038841 ~ 34042633 (+) False sh3bp5b
XM_039806468.1 mRNA upstream 3408 33916999 ~ 33919175 (+) True LOC120562644
XM_039806469.1 mRNA upstream 11369 33906390 ~ 33911214 (+) True mettl6
XM_039805694.1 mRNA upstream 18298 33894360 ~ 33904285 (+) False LOC120562157
XM_039805693.1 mRNA upstream 18298 33894362 ~ 33904285 (+) True LOC120562157
XM_039806161.1 mRNA upstream 43451 33826087 ~ 33879132 (+) True bmper
XM_039806163.1 mRNA downstream 54599 33990542 ~ 34042648 (+) True sh3bp5b
XM_039806542.1 mRNA downstream 148152 34084095 ~ 34088746 (+) True LOC120562692
XM_039804950.1 mRNA downstream 483964 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 483964 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 484865 34420808 ~ 34441093 (+) False LOC120561733
TU104327 other upstream 18320 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 61471 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 290870 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 291473 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 296581 33625931 ~ 33626002 (+) True trnap-agg_3
TU104420 other downstream 54652 33990595 ~ 34035967 (+) False sh3bp5b
TU104540 other downstream 593412 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 903214 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1252175 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1469432 35405375 ~ 35408682 (+) True G78594

Expression Profile