RNA id: XM_039806503.1


Basic Information

Item Value
RNA id XM_039806503.1
length 1220
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120562666
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19211495 ~ 19220952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAATACACTCTGAAAGGCTTCCTGTTTCATCTTTTAATTTCTAAACATGGCTGCCATGAAGAAAgtaattgttgctgctgttgttgctgctcttGCAGCTTTCATTGGACACCGATTTCTTCAACTAAAGGAAATGGCCCTCGCGTCCAGAGATGTTCCTGTGAAACCCctcaactgtcattatttaaaGAATATTGAATATGGGGCAGAGGATATCACAATACTAAGAGATGGACTGGCCTTTCTAAGCACAGGGTTGAACTATCCTGGAATGCCTTCATTCTCCGATGACCCAGGGAAAATGTACGTTTTGGATCTGCTGCACCCGAAGCCAACTCCAGTGGAGTTGCAAATCAAAGGAGAGCTCGACCTCAGCTCTTTCAACCCACATGGCATAAGTGTATACATCGATGAAGCAGATGACTCTGTGTACCTGTTTGTTGTCAATCACCCGCACCACAAAAGCCAAGTGGAGATCTTTCATTTTGTTGAGGAGAACACACTTGTGCACCTAAAAACTATTACCCACCCCCTACTCCACAGCGTCAATGACATTGTTGCAGTCGGAGTAGAGAGCTTCTACGCCACAAATGATCACTCCTTTCCCAATGAAGCGCTCCACTTTCTGACTGTCCTCCTGGGTCTGCCCTGGTGTGATGTGGTGTACTACAGTCCAAAGGAAGCAAGGGTGGCAGCGGATGGCTTTATGTCTGCAAATGGCATCAACATATCGCCTGACAAACGttatatttatatttcagaCATCCTTGACCATGCGATCGACGTTTATGAGAGACACGAAGGGGAACAATTAGTGCATCTTAAGTCTGTAGCTGTTGGCTCACTCTGTGATAACATTGAGGTGGACCACAGGACAGGTGACATATGGCTTGGTTGTCATCCAAATGGCATGAAGTTGTCAACGTATGACCCTGAAGATCCACCCGGCTCTGAGGTCATCCGGATCAAGAACATTCATTCAGAGCAGCCGGTGGTGAGCCAGGAGTACGCTGATAACGGCCATGTGCTCATAGCCTCCACTGTAGCAGCTCCCTATGAGGGAAAGTTGCTAATTGGCACTGTTTTCCACAAAGCCCTGTGTTGTGATTTGAAATAATCGGTGTATTTTGTATCTAGGTTTACTAACAATAGAAAAGTTGTAAGAAAAGATTTGgatagataaaaataaaaataatctttattCACCGTTTGCaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004064 arylesterase activity molecular_function

KEGG:

id description
K01045 PON; arylesterase / paraoxonase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98350 lncRNA upstream 19876 19190020 ~ 19191619 (+) False hcst
XR_005639802.1 lncRNA upstream 48691 19159464 ~ 19162804 (+) True LOC120562631
XR_005639801.1 lncRNA upstream 48691 19160821 ~ 19162804 (+) False LOC120562631
TU98344 lncRNA upstream 48707 19159781 ~ 19162788 (+) False LOC120562631
XR_005639798.1 lncRNA upstream 52477 19158475 ~ 19159018 (+) True LOC120562629
TU98390 lncRNA downstream 51775 19272727 ~ 19276516 (+) True G73586
TU98410 lncRNA downstream 98486 19319438 ~ 19320048 (+) True G73606
TU98557 lncRNA downstream 230831 19451783 ~ 19452180 (+) False si:ch211-254p10.2
XR_005639814.1 lncRNA downstream 232817 19453769 ~ 19456616 (+) True LOC120562732
XR_005639810.1 lncRNA downstream 393551 19614503 ~ 19625611 (+) True LOC120562701
XM_039806502.1 mRNA upstream 97 19205598 ~ 19211398 (+) True LOC120562665
XM_039806917.1 mRNA upstream 6796 19198520 ~ 19204699 (+) True LOC120562955
XM_039806478.1 mRNA upstream 16689 19193475 ~ 19194806 (+) True LOC120562651
XM_039804865.1 mRNA upstream 19393 19190079 ~ 19192102 (+) True hcst
XM_039806924.1 mRNA downstream 24406 19245358 ~ 19269769 (+) True LOC120562959
XM_039806925.1 mRNA downstream 24406 19245358 ~ 19269769 (+) False LOC120562959
XM_039806932.1 mRNA downstream 26052 19247004 ~ 19269769 (+) False LOC120562959
XM_039806926.1 mRNA downstream 26052 19247004 ~ 19269769 (+) False LOC120562959
XM_039806928.1 mRNA downstream 26052 19247004 ~ 19269769 (+) False LOC120562959
TU98340 other upstream 52500 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 52500 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 464820 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 557858 18652411 ~ 18653637 (+) False LOC120562819
TU98016 other upstream 574188 18635436 ~ 18637307 (+) False LOC120562796
TU98645 other downstream 426023 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 1787081 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 2182175 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 2378103 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 2548596 21769548 ~ 21770286 (+) True G74633

Expression Profile