RNA id: XM_039806509.1


Basic Information

Item Value
RNA id XM_039806509.1
length 1233
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120562668
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12802476 ~ 12807616 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACCAAGTACATTCAGTACCATGACATTTTCCTGTCCTTTGGCTCTCACAGCAAGGAGAGCTTGGAGTACGCCCAAACTTTCTCTATAGAAGACACCGATGTATTTGCTGTGACTTACCCCAAGTCagGTAATCCTTTATCAAAGTGAAATATGGCACAGATGCTGCACAGAGACGTTGTACAGTCTGGATGCAGGAGATCCTCCCACTGGTGCTGAATGGAGGGGATCTGACGCCGATCCAAACCATTCCTAACTGGGACAGGGTCCCCTGGCTGGAGCAGAAAAGATTAGCAATGGTTGTGGATCAGTTGGCATCTCCCCGGGCGCTGGTCACACATTTTCCTTACCGCCTCATGCCCCCTTCCTTCCACACCTCCAAAGCCAAGGTGATCTATGTCATGAGGAACCCTAAGGACATCATGGTGTCTTCATATTTCTTCCATCAGATGGCCAAATTCCTCGAGGATCCAGGAACCTTTGATGAATTCATGGATAAATTCCTTGAGGGCAGAGTGACGTTTGGCAAATGGACAGACCATGTGAAGGGCTGGAGAGACACACAGCTGGGAGACAGAATAATGTACATCACATATGAAGAAATGGCTAAGGACCTCCCTGCAGCTGTCAGGCGTTTCTCAGATTTTCTGGGCCGTAATCTGAGTGAAGAAGTCATTCAGAAGATAGCAGAACATTGCTCCTTCAAGACCATGAAGACCAACAAAATGTCCAACTTCAGCCTGGTCCCTAAGGAGTACATGAACCCCGACAAATCTCCCTTCTTCAGGAAAGgTGTTGCCGGAGACTGGGAAAACCATTTTAGCTCAGAGCAACTGGCCAGATTCACATCGGCCATTCGCAAAGAGCTGGAGGGTGAGAGCTTCTCTCTGCCATGGAGCATGGATTGACCATCAACCAAagcaaagagagagggaaagagttgtagaaataaaatcaagTGGGAAATCGATGATAACTAGGCcaaaatgtacttttggttTTAATACTAGGCATATGACTAAAagcattttattgattttaaaaacactAAACATGGTTAAAACAACCATGACTTGCATTATAGCAAAACATGTTATTAAACAGAAGATATGTTTTTGTGCTAATAATTGCATATACAAGTGGTGTTTGTTACTACAGGTAATTACAATGTGCACATgcttttaataaaatgtaaaaaaaataaaaaatacttccacacaAACACCCGCTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96341 lncRNA upstream 24173 12778230 ~ 12778442 (+) True G72117
XR_005639745.1 lncRNA upstream 32031 12761053 ~ 12770584 (+) False LOC120562335
TU96322 lncRNA upstream 73462 12718561 ~ 12729153 (+) False LOC120563165
TU96245 lncRNA upstream 162826 12639314 ~ 12639789 (+) True G72036
TU96237 lncRNA upstream 205956 12594584 ~ 12596659 (+) True G72028
TU96356 lncRNA downstream 8521 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 19035 12826651 ~ 12883769 (+) True G72134
XR_005639912.1 lncRNA downstream 40859 12848475 ~ 12850425 (+) False LOC120563130
TU96360 lncRNA downstream 40862 12848478 ~ 12851077 (+) True LOC120563130
TU96361 lncRNA downstream 40862 12848478 ~ 12851077 (+) False LOC120563130
XM_039807227.1 mRNA upstream 14065 12783819 ~ 12788550 (+) True tmem147
XM_039805267.1 mRNA upstream 20385 12780215 ~ 12782230 (+) True LOC120561926
XM_039806042.1 mRNA upstream 24889 12773881 ~ 12777726 (+) True gapdhs
XM_039807309.1 mRNA upstream 73389 12714918 ~ 12729226 (+) False LOC120563165
XM_039806506.1 mRNA downstream 465 12808081 ~ 12819134 (+) False LOC120562667
XM_039806505.1 mRNA downstream 4297 12811913 ~ 12819134 (+) True LOC120562667
XM_039806504.1 mRNA downstream 5783 12813399 ~ 12819134 (+) False LOC120562667
XM_039805269.1 mRNA downstream 35145 12842761 ~ 12848460 (+) True ncam3
XM_039806881.1 mRNA downstream 44142 12851758 ~ 12881403 (+) True mroh1
TU96328 other upstream 29176 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1093106 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1186373 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1186373 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1981115 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 317318 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 660611 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1325995 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1368233 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1618178 14425794 ~ 14426180 (+) True G72506

Expression Profile