RNA id: XM_039806529.1


Basic Information

Item Value
RNA id XM_039806529.1
length 2722
RNA type mRNA
GC content 0.53
exon number 16
gene id pex5
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24099821 ~ 24113212 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGAATACGAAACCATCGCATCGTTACGCGACACTCCAAGCGATCGGTGAAGGGTTTTGTGGGTCATGGAGGAGGAAGGTAAATAAAGAGGAGCGCTAATAACAGATAGCGGCTGATTTCAGACGGTTACCGGGAGGTTTGACACTGCGGCAACTTTTGTTGTAATACAGTTGGTGAGGACAGACCGGAGAGGAGGGACTGTCGCTTCGGCTCCAGCAGCAGCTGTCGGCGTTCTCAGGTGGTCTGATTGGGTTTGCCTCGTCCTTGTGTTGCCATGGCGATGCGGGAGTTGGTGGAGGCAGAATGTGGGGGAGCCAATCCCCTCATGAAGTTGACCAGTCACATGAGCAAGGAAGGGGGTGCATGGCGACACCGCTCAACACCTACAattccCCCCTCTCCGATTGAAATTGCAACTGAAGAAGAGCTGGTGAATGAGTTCCTTCAGGCGCCCCCCCGGCCCCCACACACATTTGACATGGGTCAGCTGTTGGAGGAAATGCAGCAGATCGACCAGCAGAGTTACAGACAAGCTCCGCAGAGAGCTCCTGATGTGGCAGCGTTAGCCCTCTCTGGTGATTGGACGGCCGAGTTCCTCTCAGGTCCTGACTCTGCCTCCACACCGGGGCTCATCGCTCTTGGTGATGCAGCAGATGCTGATTGGACGAAAGAATTTATCGCTGAGGCTGCAGATCCTGGACGGTGGGCAGAGGAGTATCTGGAGCAGTCGGAGGAGAAGTTGTGGCTGGGAGACCTGGGAGACAAGGAGAACGAATGGACAAAGGAGTATCAGCCAGGGGAGGAGCTGAGGCAGACAGCCAATGAGCTCGTCTCAAAGGTTGACGACCCCAAGTTACAAAACACTGAGTTCCTGCGATTCATTAGGCAGATTGGCGAGGGCAGTGTGACAGTGGAGAGCAGGACAGACAAACAGCTCAAAGATAAAGCTCAGGCCAAGGAGGCTCAGAACTGGGCCTCCAACCTCAACCAGGTGTCAGAGGAATCGGCTGAAGCCTGGGTAGATGAGTTTGCCACATCAGGACCGGATTTCCAGCAAGCTAAAGCTGCAGTGGAGAGTGATGTGGATTTCTGGGAGAAGCTGCAGCAGGAGTGGGAGGAGATGGCTAAGAGGGACGCAGAGAGCCACCCCTGGCTGTCTGACTTCGATCAGCTACTCAGCACTTCTTATGACAAGGGTTATCAGTTTGAAGAGGAGAACCCCTACTTAACCCACCCAGACCCTTTGTCAGAGGGAGTGAAGAGGATGGAGGCGGGGGACATCCCTGGTGCCGTACGGTTCTTTGAAAGTGCTGTACAGAGAGAACCAGACAACCAGCTGGCGTGGCAATATCTGGGAACCTGCCAGGCAGAGAACGAGCAAGAATTTGCTGCCATCAGTGCTCTCCGCAGATGTATAGAGCTGAAGAACGACAACCTGACTGCTCTGATGGCGTTGGCCGTCAGTTTCACTAACGAATCGCTGCACAGGCAGGCCTGTGAGACTCTTCGTGATTGGCTAAAGCACAATCCAAAATACCGTTCTGTGTGGGAGCAGAAGGAGGGTGAACCCCAACAGGATGGggccagagaaagagagaaggagagggagaggttCGGGTCACTGCTGCCGGAATCCTTGTTTACTGATGTCCAGTCCCTGTTCCTGCATGCAGCCAACTCTGACCCCGCCCAGGTGGACCCCCAGCTGCAGTGCGGTCTGGGAGTTCTCTTCAACCTCAGCGGAGAGTACGACAAGGCGGTGGACTGTTTCAGCGCTGCTCTGTCTGTCACACCACAGGACTACCTGCTGTGGAACAAGTTGGGGGCCACACTCGCCAATGGAAGCCGCTCAGAGGAGGCTGTGGCCGCCTACAGGAGAGCTCTGGAGCTGCAGCCTGGTTTCATCCGTAGTCGCTACAACTTGGGAATCAGCTGTGTCAACTTAGGAGCACACAGAGAGGCAGTGGAGCACTTCCTAGAAGCTCTGTCTCTACAGCGCCAGGCTGCTGGGGATGGGGCAAGAGCTGCAAGGGGGCTTGGAGGTGCCGCAGCCACCGTGATGTCTGACAACATCTGGTCCACCCTGCGTATGGCTCTCAGTATGATGGGAGAGAGCGCTCTGTATGCTGCAGCAGACCGTCGGGACTTGGACACATTGCTGGCTCACTTCTGCCAGAGAGAGGTGGACGGCGGGACTGAATGAAAATCAGCCACGGGAGGGCTTattgagtgtgaatgtgtgtcgcTGGGAGGTAAATGTTTGGGTGAGTGAATGAAGCGGAGAGGAATCGGAGAGGTAATGGTTACAGAGAAATGGACGAGGAAGACACTGTGAATTATCCACCATCCCTGAGACATCATCTTGTGGTCATGTGCGCTTGAATAACTTCTATCAAATATTGCAGTATTAGTGTCTACCTGGAAGACGCAGCCAGCAACAATACAGTCATGTCACTGTATTTTACATGTCTGACGGTCCTCACATTTACTCTTACTCTGTTGATCTGGAGAACTGGGTCTAATAAAATGtcacttttgttgttgatttgaaattttttttctcagtgaAGAAAGTAAAAgatgaatgatgatgaatgcCATGTGGATGGTTTGTTTATCAAGACACTCAATGCTCTCACAGTTTTTTCTTAAGAGAAGGTTGTAAGTTGAACTGTATACTCACTGCAAATATGTAGATTAAAGGTACAGTGTTGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101028 lncRNA upstream 26202 24073389 ~ 24073644 (+) False lpcat3
TU101023 lncRNA upstream 46890 24048925 ~ 24052956 (+) True G75523
TU101012 lncRNA upstream 68507 24027883 ~ 24031339 (+) True G75517
TU100984 lncRNA upstream 124112 23972327 ~ 23975734 (+) True G75493
TU101106 lncRNA downstream 6105 24119317 ~ 24122009 (+) True G75582
TU101108 lncRNA downstream 8815 24122027 ~ 24125081 (+) True G75583
TU101154 lncRNA downstream 102928 24216140 ~ 24216569 (+) True G75611
TU101174 lncRNA downstream 182626 24295838 ~ 24296723 (+) True G75622
XR_005639733.1 lncRNA downstream 355622 24468834 ~ 24488842 (+) False LOC120562289
XM_039806547.1 mRNA upstream 1727 24074083 ~ 24098119 (+) True clstn3
XM_039806772.1 mRNA upstream 26148 24056437 ~ 24073698 (+) True lpcat3
XM_039806773.1 mRNA upstream 26148 24056437 ~ 24073698 (+) False lpcat3
XM_039806142.1 mRNA upstream 60419 24026915 ~ 24039427 (+) True atn1
XM_039806551.1 mRNA upstream 73992 24019895 ~ 24025854 (+) False LOC120562699
XM_039806921.1 mRNA downstream 2291 24115503 ~ 24118065 (+) True cdca3
XM_039805087.1 mRNA downstream 22477 24135689 ~ 24151437 (+) True usp5
XM_039805088.1 mRNA downstream 22478 24135690 ~ 24150752 (+) False usp5
XM_039805090.1 mRNA downstream 38524 24151736 ~ 24162316 (+) True cd4-2.2
XM_039805100.1 mRNA downstream 49933 24163145 ~ 24180552 (+) True cd4-1
XR_005639925.1 other upstream 45518 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 67401 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 220431 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 331269 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 332379 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 321927 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 321927 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 802042 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1378602 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1389388 25502600 ~ 25504052 (+) True apoc2

Expression Profile