RNA id: XM_039806534.1


Basic Information

Item Value
RNA id XM_039806534.1
length 1275
RNA type mRNA
GC content 0.53
exon number 9
gene id snrnp48
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35119433 ~ 35127711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCCAACGCCCCGTGACACGTCATAACCTCGCGCAGAACATGGCTACCGCAAGTGCAGCGAAAACACAACACCGATGATTTTGGGACAAATTATCATctaattttgacttaaaaccTCACAATGTCCGACTCATTGAAAACACAGACTCTTCAGGATCGACTGGACCGTCTACAGGAGCTGACAGAGTTCACAGAGAACTGCAAAAAGCAGCTAAACGATATCTTTGAAACGCTGGGATGGTCGCTCGACGACTCCAACCAGGAAGCAATGGAGCAGTGTCCCTACGACCCCAACCACAGAGTCCCGGTGAGGAGCATGGAGAAACACAAAGCCTCCTGCCGCCTCCGAAAGTTGGGCTACTCCGCTGAGGAGGAGGCGGAGATGTTCGACCCTTCTGTGTGTTATGAGAACAGCAGTGTCAGAAGCTTCACGATGGACAAATCCACCCAGCACCAGGTGATCCTGCAGGCGAGGTCTGCTGCACCGCTGATGAGGATGGAGGGAGTCTTCTGGCAAGGTCAGTACACAGGCCAGCCCGTCGACGTACCTGAGAACCACAAGCGCGCGGTGTGTGACCTCACTGTGGCCGACCGACTTGCTCTGTACGATCATGTGGTCGGCGTCCTCAACCAGCAGACGGAAGCGGCCTCCTCCAGCAACGACGATCTCTACGTAGACTTGGTGTCCAAACTCCAGAAGGatgAACAACAGAACGAACCAAAGACTCACCTGGAGCTGATGGCAGAGATGAGGGACTACAAGAGGCGGCGTCAGTCTTACCGAGCCAAGAACGTTCACATCACCAAGAAGTCCTACACCGAGGTGATCAGAGAGGTGATCAACGTCCACTCAGAGGAGCTCAGCAGACagtggagagaagaggaggacgaATCGACGAGATCTGAACTCTCCTCCCAAAGGCGTCGGCTGGATGAGAGGCGGTCGCTGTCGTCAGAGTCTCGCCACTCCCACAGCAGACGCCATCGCAGCCGAGAGCGaagcaaagacagagagagcaagaagaagaggaagaagagggagagGGATTCCCGTTCTCCTGATGACCACCACCACGAccgcaagaagaagaaaaagaaaaagaaagaggagagggagaagtgCTAGTGCTGGATCAGCAACAACAGATCAGATGAGGTCAAAGGTCATTGTGGCTCCTACGGGTCAGAAGATGTCAGGTGTCACAACATTTTAAGATTATAAACAAGGGGAGATAAATAAATGGGAATAAAGTTTTGGGAACCAGCAACATCAA

Function

GO: NA

KEGG:

id description
K13156 SNRNP48; U11/U12 small nuclear ribonucleoprotein 48 kDa protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104847 lncRNA upstream 88298 35030908 ~ 35031135 (+) True G78440
TU104755 lncRNA upstream 201364 34914357 ~ 34918069 (+) True G78366
TU104754 lncRNA upstream 262901 34844239 ~ 34856532 (+) True LOC120562567
XR_005639792.1 lncRNA upstream 262908 34839160 ~ 34856525 (+) False LOC120562567
TU104947 lncRNA downstream 41201 35168912 ~ 35173203 (+) True G78488
TU104979 lncRNA downstream 79220 35206931 ~ 35207166 (+) True G78516
TU104981 lncRNA downstream 102740 35230451 ~ 35230899 (+) True G78518
TU104982 lncRNA downstream 104435 35232146 ~ 35232446 (+) True G78519
TU104987 lncRNA downstream 112326 35240037 ~ 35240487 (+) True G78524
XM_039807369.1 mRNA upstream 48043 35059459 ~ 35071390 (+) True LOC120563199
XM_039807365.1 mRNA upstream 61070 35043221 ~ 35058363 (+) True rrnad1
XM_039807366.1 mRNA upstream 61070 35045302 ~ 35058363 (+) False rrnad1
XM_039807294.1 mRNA upstream 154635 34952052 ~ 34964798 (+) False hapln2
XM_039806533.1 mRNA downstream 1403 35129114 ~ 35168180 (+) True zgc:113232
XM_039806851.1 mRNA downstream 49697 35177408 ~ 35183557 (+) True cd83
XM_039806875.1 mRNA downstream 60972 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA downstream 60972 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806874.1 mRNA downstream 80436 35208147 ~ 35230312 (+) True wdr73
TU104752 other upstream 262901 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 575054 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1083466 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1215170 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 1258321 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_361 other downstream 60407 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 277664 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 738131 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 1010048 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1166276 36293987 ~ 36350995 (+) True G78772

Expression Profile