RNA id: XM_039806538.1


Basic Information

Item Value
RNA id XM_039806538.1
length 2493
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120562688
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16632876 ~ 16718524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGCAAGGGCCCCGCCTCCCCCTCGTGTGTCATGTTTACAACTTCGATGAGGAAGATGAAGCGGAACTATTCTTCTAGTCAcgcaaatagaaaaaaaacacagcaatcAGGTGTTTTATGAGCTACAGGCGCTCATGATCAAGGGAAATCCAAACCTGTGACCTCACTCTTTTGCCTGAGATGCTGATGCATAGCTACTTTCCTGCCCCATCTTTCCTGTGTGGCCCACATCGCCTTCAAGCCCCATCTCTCCTGACACTCCtggggaagaagagaaagaaacacagaGGATGAGAGGAGGGGAGAGCGAGGATGAAGAATATATGGAGAAGATTTGAGctcttcacagcttctctttcCTGGGCCTTCCAGCAGCAGGCCGTACCGCCAAAGTACCAGTACCGCGATCCCGTGACATCTGACCTCCTGCTGTGCGACCAGTGCCCTCCTGGCACAGCAGTGAAGCGACACTGCACCGCTGCCGCACCCACAGAGTGCCAGGCCTGTCCTGAGAGGCATTTTGCTGAGAACTGGCACTGGGGGGATACGTGCCAATACTGCACCTCGgttTGCAAAGAGAGACAGCTTGTGAAGCAGCAGTGCAACAGCACTCACGACCAGCTGTGTGAGTGCGCTCCAGGTTTCCACCTAGTGGTGGAGTTCTGCATCACACACAGTACCTGTCCACCTGGCTATGGAGTGACAGCTTTAGGTACACCGGTCAGTGACACAGTGTGTGAACGTTGTCCCGCTGGTCATTTCTCCAGCGGCGACTCCACCACTGAGCCATGTCAGCCCCTCAGAAACTGCTCCGATTTGGGCTTGAAGACACTGAGATGGGGCACGTCCACCTCAGACAGCCTCTGCGGCACTCAGGACAAGACGGCAATGCTGGATTGTGCTCAGCCTCACACTTTGTGCCACACTGACGTGACCTTGTGTGAGGAGGCAGTCTTCCAGTCTCTTTCCTCCCTGCGACTGTCCTCGGTGCCCCTGGAGCAGCTGTTAGAGAGTCTCCCCGGGCGTAGTGTGGATCGTAAGAGCCTGGAGAGACTGAAAAAGGCCTGCTCTCCCCAGCAGCAGGTCCTCCAGCTGCTGCGACTGTGGAGGGAGCAGAACAAAGACCAGGACAAGATGTACAGCATCAtacaagGTGTGAACCACTGTGAGAGGAAAGTCTCTCGCTGCAACGGCCTAAAAAACCTGACCCTAGGTGATCTCCTGAAGGTAACTAACAGCCTGCCGGGGGTCAGAGTTCAGCAGGAGGATGTCCGGGCCGTGGTCTCTACTTGCCTGCCCAGGCAGTACATCCTGCAGCTTCTTCACCTCTGGAAGACTGCAAACTATGACCTGGATCTAGCCAAAGGCCTGTCTCACAGTCTGAGGGTGCTACGCAGCCAGGGGGCGCCACGCCATCTGCTGAAAGTCTTGAAGAAGATCAGCCGCATCATAGGAACCACCTCAGCGCACAAGATATATGAGAAGATGTTTGTCAGCGTGCTTCACGATGAGTCCTGTTTTAAGGCTCATAAGCCATTAAATGAATAGGGATTTGGGAGGTTCAAATAGGAACATATGGTATCTATAGCATAAACAGACACTAATGCATTGTCAGAtaaagaacacacaaacacataaagacacacccTTAGTGGAGAAATGTATCTGAAAGAGTAACAGACATTTAAGATATCACCAAATGACATCAAGCTATGCATAAAGTGCCTAACTGTAACACAGGGGCATGATGGGAGGGTAGATTTGTCGCTGTTTCTCTGATTTTCCAGCCAAACCCTCTGCCAAAATAAGGCTGTTTTGATTATATGAGGTAACAGGGGATGCTAATAATTCCACCCTCAgtctacagtatgtgtctgCAGTGATTAATCTAATAAGcctcaaaagaaagaaagaaaaactatCACACATCTCTGTACTCCAGGCaggctgaaaaagaaaaaaaggtttccTGGGAACTTTATGACCGGAGtctgtgaaaaatgaaaaactatTTAAGATGTAAATAGCACACTATTTTATGAAAGATAGGCAGGCAGATGTTgcgttttttattattatgcttTCTCGCTGATTAAGAGGAAGGATTTGGTTTCATAATGAAATACATGTATTTCCTACAGTTTCcctttgtttgttggtttgttctGGACTGCTGGCAAGTAAAGCGCATCTGAATTATTGTTAAATTGTCAGCTATATGAATGTACAAAGGAGTGCAATTgttttctatttaaaaaaataattctacTTTCTGAATATGtaaaggcttgttttttttattactatcaGAAATACTGGATTCCAAATGCTGCAAGTTTGTGAAGtgatatttgttttatattttgttttatcacttttatatTATTAAATGTACGATCTTTTTGTATATATGCTTGACTGGTCCTCTTTAAGCTCGAATAACTTGTGAACACTAAGTCAATTTATCTGATTAAAATCagtttgtaaaaa

Function

GO: NA

KEGG:

id description
K05148 TNFRSF11B, OPG; tumor necrosis factor receptor superfamily member 11B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97233 lncRNA upstream 138304 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 142498 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 146960 16485713 ~ 16485919 (+) True G72797
TU97227 lncRNA upstream 150381 16482255 ~ 16482498 (+) True G72796
TU97226 lncRNA upstream 150947 16480679 ~ 16481932 (+) True G72795
TU97304 lncRNA downstream 12313 16730837 ~ 16731044 (+) True G72852
TU97321 lncRNA downstream 241264 16959788 ~ 16962840 (+) True G72859
TU97344 lncRNA downstream 273192 16991716 ~ 16991989 (+) True G72879
TU97325 lncRNA downstream 347065 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 673744 17392268 ~ 17403627 (+) True G73019
XM_039805971.1 mRNA upstream 124138 16495726 ~ 16508741 (+) True mboat1
XM_039807219.1 mRNA upstream 925377 15682419 ~ 15707502 (+) True LOC120563110
XM_039807297.1 mRNA upstream 957657 15657241 ~ 15675222 (+) True slc6a3
XM_039806257.1 mRNA upstream 979827 15619516 ~ 15653052 (+) True LOC120562533
XM_039804827.1 mRNA upstream 1072587 15553541 ~ 15560292 (+) True irx4a
XM_039806539.1 mRNA downstream 3112 16721636 ~ 16724556 (+) True LOC120562690
XM_039806894.1 mRNA downstream 7824 16726348 ~ 16729348 (+) True LOC120562939
XM_039805984.1 mRNA downstream 14108 16732632 ~ 16816257 (+) False LOC120562315
XM_039805978.1 mRNA downstream 14109 16732633 ~ 16816257 (+) True LOC120562315
XM_039805979.1 mRNA downstream 14109 16732633 ~ 16816257 (+) False LOC120562315
TU97163 other upstream 560678 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1076927 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1606226 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2002416 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2206699 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 650179 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 731061 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 738119 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 926989 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 1032432 17750956 ~ 17779130 (+) False paqr7b

Expression Profile