RNA id: XM_039806544.1


Basic Information

Item Value
RNA id XM_039806544.1
length 297
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120562694
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37324901 ~ 37326438 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACTTGATTGAACAACTTGAACCATCCTAAGATGAAGACATTCTATGGCGTTGCAGTTGCAGTGGCCGTCGTGCTCACCTTTGTTTGTATTCAGCAGAGCTCTGCTGTCCCAGCCACTGAAGTGCAAGAGCTGGAGGAGCCAATGACCACCGAGAATCCGGTTGCTGAATATGAGGCGACATCAGTGGACTCATGGAAGATGCCGTATAAAATCAGAAACAAGCGGTTCATTTCGTGTCGCtggtgctgcagctgctgcaacCCCGCTTTCTGCGGAGTGTGCTGCTCATTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105638 lncRNA upstream 118653 37201191 ~ 37206248 (+) True G78947
TU105612 lncRNA upstream 235487 37041691 ~ 37089414 (+) True G78925
TU105563 lncRNA upstream 276868 37004604 ~ 37048033 (+) True G78889
TU105607 lncRNA upstream 304433 37019204 ~ 37020468 (+) True G78922
TU105605 lncRNA upstream 314421 37009434 ~ 37010480 (+) True G78921
TU105689 lncRNA downstream 106908 37433346 ~ 37467880 (+) True G78990
TU105698 lncRNA downstream 166368 37492806 ~ 37494603 (+) True G78998
TU105699 lncRNA downstream 173452 37499890 ~ 37500110 (+) True G78999
TU105705 lncRNA downstream 199438 37525876 ~ 37530597 (+) True G79004
TU105708 lncRNA downstream 204252 37530690 ~ 37533069 (+) False G79007
XM_039806174.1 mRNA upstream 400074 36895389 ~ 36924827 (+) True pik3r4
XM_039805847.1 mRNA upstream 455567 36855419 ~ 36869334 (+) True aldh5a1
XM_039805848.1 mRNA upstream 455567 36855699 ~ 36869334 (+) False aldh5a1
XM_039807332.1 mRNA upstream 495479 36809560 ~ 36829422 (+) False LOC120563178
XM_039805211.1 mRNA downstream 9633 37336071 ~ 37351571 (+) True LOC120561884
XM_039805209.1 mRNA downstream 28545 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA downstream 29879 37356317 ~ 37359625 (+) False LOC120561883
XM_039805208.1 mRNA downstream 29879 37356317 ~ 37359625 (+) False LOC120561883
XM_039806177.1 mRNA downstream 35786 37362224 ~ 37377784 (+) True LOC120562463
TU105558 other upstream 396030 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 621036 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 859671 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 890676 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 973906 36293987 ~ 36350995 (+) True G78772
TU105685 other downstream 104733 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 204252 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 204252 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 552526 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 729978 38056416 ~ 38077649 (+) False nek11

Expression Profile