RNA id: XM_039806557.1


Basic Information

Item Value
RNA id XM_039806557.1
length 2130
RNA type mRNA
GC content 0.44
exon number 2
gene id hoxa13b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19851243 ~ 19853588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGGGCATGCTATGACCGCTTCATTACTCCTCCATTCGCACTGGATTGACCCGGTGATGTTCCTCTACGACAACGGCTTGGATGAAAGAAGTAAGAACATGGAAGGATTTACTGGAGGTAATTTTGCTGCAAACCAGTGCAGGAATTTGTTAGCGCATCCAACCTCGCTGGCTCCGAGCACCACCTACGCTGCGAATGAGGTGCCAGTCTCTGGCATGGGGGAGCCTGGCAAACAGTGCAGTCCCTGTTCTGCCAGTCAGAGCTCGCCCAATGCATCTTTGCCTTATGGATATTTTGGTAGCAGTTATTACCCATGTAGGATGTCACACGGCAGCGTGAAGGCTTGCGCGCAGCCCTCTGGTTATGGCGATAAATACATGGACTCATCGGTCTCTGGCGAGGAGTTCTCAACCAGGGCAAAGGAATTTGCGTTTTATCAGGGCTATTCCTCGGGTCCTTACCAGCCCAGCTACTTGGACGTCCCTGTCGTACCTGCGCTGAGTGCTCCATCTGAGCCAAGACATGAATCTCTGCTGCCCATGGAACCCTACCAGCCGTGGGCCATCACCAATGGTTGGAGTGGTCAAGTTTACTGCACCAAGGAGCAGCCACAATCAAATCCTCTGTGGAAATCCTCGttacaagacacaaTATCTGGTGGAGACAGCTCTGTCCGCCGTGGGAGAAAGAAGCGCGTGCCATACACCAAGGTGCAGCTCAAAGAACTGGAAAGGGAGTACGCCGCCAATAAATTCATCACCAAGGACAAAAGGAGGAGGATATCCGCGCAGACAAATCTGACAGAGAGACAAGTGACAATCTGGTTTCAGAACAGGCGCGTAAAGGAGAAGAAAGTCGTCACTAAATTCAAGAGCTCCAGTTAGCTCTGGAGATACTGAAACAGGAGGTGAAGGGCcttcatctaaaaaaaaacaaaaaaaaactgtgctaTAATTTATTACATTATGAACGGGTTCTTTGTCGCCAGAGCGGCTCTGTTTCGACCTACACATTTCCTTCCTGACGTTTTAATTGGAACCAGTCGATGCGGCCTGTTGACAGAAGATCGGAAATGGGTTGCAACATGTTGACCAAGGCGATTCTGCGATGGATGCATGCTCtccttaaaatattcaccaagcAATAAGACATTCGGCCTTAAAAGGCACGAGACACCCCGAGCAATCCTGCGCTTTTATTCCACTTAATCTAATCCAGAATTTAAGACTGAATCAGTTACTATATTCGTCTTTAGACAGTGATGCAGTGTTAATAAATAGGGGGCCATAAACTTTCAGTCGCCTTCACTTAAACCTTCAGTCTGTGATCAGTACAATGAAAACAGGCCAAGATGAACacataaataacagaaaatgattTTGAAAATTATATTTCCAGCAGCTCCTTTCattcagagaaaaaaataaaatatctgtAGGCCTTCTCTGTCCTTGCAGAGGCAATAGAGCCTACAACACGCCTTATTTCAATTATTTAGATAAACTTAATTTCACAGTTTGAAAAACAGAGTTTACACTTCATCCCTGCTTTCCATTTAAAATAAGTCTCTGTTGTTTAATCGTCCAGTATCTGATAAAACGCGTGAAACTAGCTTGAGCATTTCAATAGGTTTGCCCACACTTGTCCATGCCACTGTCCCTTTTTCTAAACACAGGGTTTTACTCAATAACTCTCAGAATAAAACTGACCTATGCAATTTCCGCCTGTCAGTCAAGAAGAGTACTGAAAACGTAAGCATATTTAAACTTGTAAATACTATCTGACAGCAACTATCTATTCTCCCTTTTATGACTGCAATAGCCAAAGTTTTTGACAATAAATGTTTGAGAGACGCAATGTGATCTTGtcattttgattcatattaTTTGGTAAGCCTACAAATTGGACATGGGGGCTTGATTGATAAAGGTTAGGGTTTACAAATCCTTTTAATGGTGAAATGACATATGAATACAGTAtattccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggccagGCCTGCCTGAGCTCAGAAGCTCTGTGAGCTTCAGTCATTAATAAGAGTTGATGTCGCCATCTAGTGTCATAGCTCTGTCAGCACagcttgt

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98714 lncRNA upstream 30652 19820235 ~ 19820591 (+) True G73836
TU98646 lncRNA upstream 202336 19646975 ~ 19648907 (+) False G73779
TU98640 lncRNA upstream 211784 19634873 ~ 19639459 (+) True G73776
TU98641 lncRNA upstream 214361 19634873 ~ 19636882 (+) False G73776
XR_005639810.1 lncRNA upstream 225632 19614503 ~ 19625611 (+) True LOC120562701
TU98764 lncRNA downstream 165521 20019109 ~ 20052006 (+) True G73871
TU98775 lncRNA downstream 187283 20040871 ~ 20046380 (+) True G73881
TU98936 lncRNA downstream 354259 20207847 ~ 20209327 (+) False LOC120561838
TU98940 lncRNA downstream 362619 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU99044 lncRNA downstream 460896 20314484 ~ 20318117 (+) True G74067
XM_039805067.1 mRNA upstream 3841 19838549 ~ 19847402 (+) True hibadhb
XM_039805071.1 mRNA upstream 3841 19838566 ~ 19847402 (+) False hibadhb
XM_039805069.1 mRNA upstream 3841 19838714 ~ 19847402 (+) False hibadhb
XM_039805070.1 mRNA upstream 3841 19838780 ~ 19847402 (+) False hibadhb
XM_039805066.1 mRNA upstream 32223 19806778 ~ 19819020 (+) True jazf1b
XM_039806563.1 mRNA downstream 5516 19859104 ~ 19861275 (+) True hoxa11b
XM_039806522.1 mRNA downstream 11567 19865155 ~ 19867601 (+) True hoxa10b
XM_039806535.1 mRNA downstream 15592 19869180 ~ 19870738 (+) True hoxa9b
XM_039806514.1 mRNA downstream 23289 19876877 ~ 19878668 (+) True hoxa2b
XM_039807244.1 mRNA downstream 28289 19881877 ~ 19891979 (+) True skap2
TU98645 other upstream 201732 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 692248 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 692248 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1104568 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1197606 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 1154445 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1549539 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1745467 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1915960 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 2278990 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile