RNA id: XM_039806594.1


Basic Information

Item Value
RNA id XM_039806594.1
length 1554
RNA type mRNA
GC content 0.48
exon number 13
gene id trmt11
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13252697 ~ 13264092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagacgAGTCCCTGCTCCCGCGGAGATTAAGGCCTTGCTGGCTCTTAGAGGAAAATCATTCCAGCCGAGTGGAAACTTCAAAGAAAAGTCTCCTTTCTGGTGCCTGGATGGTTTGTCTGAGGAGGATGTCTGCAGTGTCATGTCCAGATCCGTTTGTGCAAAGTCTGCTTTTGAACTTTGGGGCCACggaaaaacacacagtgaaCTTAGAACATCCCTCTTGAACTACCCATCGGAGAACATGTCACCATTCATGCAAAAAGACTCCACTTACAGAATCAATGTCTATACTTTCAACAAGACTCTGGAGTTTGCAGACAGAATCAAAAGGATTGAtGCTATGGAGTTTCTTCCGTTTGAAGGAGCTGTGAGCCTGAAGAGCCCTCAGCACTGCTTCTGTTTGTTGGAAGATTACGGCACAGACCCCAACGACATCCCTGAGCATCCAAACTACATCTATTTTGGCCGATGGATAGCGGATGGACAGCGTGAACTGATCCGCTCCCACAGTGTGAAGAACAGACACTTCATAGGGAACACCAGTATGGATGCTGGCCTCTCATTCATTATGGCCAACCACGCTAAAGTCAATGAGAACGATCTCGTCTTTGACCCGTTTGTTGGCACAGGGAGCCTGTTGGTAGCATGTTCTCATTTTAGAGCCTACGTCTGTGGAATGGATATTGATTACAACACCATTCATGGCAGAGGCCGGTCAAGCCGCAAAGACCAGAAGTGGCGAGGGCCTGATGAGAACATCAGAGCCAACCTGCGGCAGTATGGAACAGAGGAGATGTATGTAGATGTAATGGTGTCTGATGCATCCAAGCCTGTGTGGAGGAAGGCTGCTCTGTTTGATGCCATCATTACTGATCCTCCGTACGGTATCCGTGAGTCCACACGGAGAACGGGCTCCCACAAAGACGTTCCTAGACCCCCTGATGTCCTCTATGCCGAGTCTCACGTTCCCGTCTCACAGGCGTACCACCTGAGCGACATCTTCACAGATCTGTTAAACTTCTCTGCCCACCACCTGGTCTTGGGCGGGAGGCTCGTCTATTGGCTGCCTGTCTACAGACCAGAGTACTGTGAGGAGGTGGTACCTCTCCACCCGTGTCTCCGGCTCATCAGTAATTGTGAGCAGACACTCTCCAGCCACACCTCGCGGCGCCTGATCACCATGGAGAAGATCAAGAACCCTGAGGAATTAGACAGTCTGGCTCATTTAGCAGACCCACGCTTCAGCCCCTACCAGGGGCACAACGCCTTCAGAGAGAAGTATTTCAGTGGACAAAACAAGAGGTGTGGCAAGGAGGACAGCAAAACtgttgtcaatggagagtgaaCGAATCGATTGCCTAAGTGTCTTTATAGAAGACCGAAAACAACAGCACCCAAGAATCAGAACGTGGTTGTCAATGGACTCAAAGAGGGAAACAAACTGATCACTTATTTGTTACAGTTGTAATTTTTAAAATCTTTCTCACTATTTTaattatgattatttttatGCTTGTACTTATTGCTTTGCAAATAAATTGATAAAATACAGTC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96524 lncRNA upstream 3085 13245718 ~ 13250107 (+) False hint3
TU96504 lncRNA upstream 44158 13208828 ~ 13209034 (+) True G72242
TU96453 lncRNA upstream 127653 13124934 ~ 13125539 (+) False G72204
TU96447 lncRNA upstream 128665 13119637 ~ 13124527 (+) True G72199
TU96444 lncRNA upstream 133091 13112215 ~ 13120101 (+) True G72198
XR_005639803.1 lncRNA downstream 181774 13445866 ~ 13448239 (+) True LOC120562636
TU96597 lncRNA downstream 207659 13471751 ~ 13473470 (+) True G72309
TU96603 lncRNA downstream 211278 13475370 ~ 13483111 (+) True G72314
TU96612 lncRNA downstream 268033 13532125 ~ 13533002 (+) True G72319
TU96607 lncRNA downstream 295668 13559760 ~ 13606245 (+) False LOC120562530
XM_039806596.1 mRNA upstream 3082 13245668 ~ 13250110 (+) True hint3
XM_039804685.1 mRNA upstream 9967 13239114 ~ 13243225 (+) False LOC120561555
XM_039804684.1 mRNA upstream 9967 13239239 ~ 13243225 (+) False LOC120561555
XM_039804686.1 mRNA upstream 9967 13240467 ~ 13243225 (+) True LOC120561555
XM_039804904.1 mRNA upstream 37837 13211583 ~ 13215355 (+) True cmtm8b
XM_039805216.1 mRNA downstream 131346 13395438 ~ 13411921 (+) True rspo3
XM_039805217.1 mRNA downstream 131346 13395438 ~ 13411921 (+) False rspo3
XM_039805214.1 mRNA downstream 150232 13414324 ~ 13418452 (+) True LOC120561886
XM_039805705.1 mRNA downstream 204119 13468211 ~ 13471516 (+) True prelid3a
XM_039806252.1 mRNA downstream 302059 13566151 ~ 13606167 (+) True LOC120562530
TU96452 other upstream 127295 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 479753 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1543683 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1636950 11599037 ~ 11616242 (+) True G71896
TU96598 other downstream 204135 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 869519 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 911757 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1161702 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1362386 14626478 ~ 14630463 (+) False LOC120561718

Expression Profile