RNA id: XM_039806604.1


Basic Information

Item Value
RNA id XM_039806604.1
length 4930
RNA type mRNA
GC content 0.42
exon number 13
gene id ddx61
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25422850 ~ 25436271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACGAGCGCGCGGCCATGTTGAATTGTCGATATTCCGAAAGAAGAGACAAAAGAGTGAAAACTCGGTGGATTTCTCGAAACAGTCTGTAGTTACCGAACTTAATTAAACTGTCGAAGAAACGTTAAGCAACGACGCAACAGGGAAGCTTGTTGGTGGATGTAGCAATGTGTAAcctggattttttttgttgatcgGCAATTCCCAAAGCACTTTGCAGACTGTCATCTCAAACTTTTGCTGCAGAAGTAAACGAAACCGGAACAAGATAACCACAGACATTTAAAGTGGACTGTCCATGTTAAAGACACAATTGCTGGAGTTACTTTTTTGAGCCAGTTTTGAGCCCCAgcaaagacatttgaagactttTTGATGTCAAAGGAACAAATCCTAAAAATAGTCAGACGTGACGAAGCAGATCATATTTTACTACTGGCCATTTTGAATGTATAAACGAAGCACTTGGACTTAAAAAGCCAAGATACTCGAAGGACACAAAAAGACAATTCTGGATCATTGTTACAGCAAGGATAAGAGTACTCTGACAAACAATTTTGAAACGGAGTATGTTTTGGTCAcataattgatttatttattcatatgaATGTTAATTTCTCCCTTTTTTGGAGAGTTGTCTTGTAAATAGACAGAATTCATAAGCAGACCTCTTCTTTTCAAGAGGCCTGTACGTCAGATAGTGTACACAAtacattctttaaaaaaaagaaacttttttttttttattattatttcagcttttagttgttttttacaCTGGTGCATTAAGCAAGATATCAGTAAAAGAGGCACACTGAGGCACATATAACACACTGAGGAAAAGTGCCAGTTATTGTGATGGCTACAGCAAGAACGGCAAACCCAGCACAGATGATTGGATTGAACAAACCAGCAAATGGGCAactcagaggacaggcagcactTCTTGCAGCTGCCCAACAGTCCAGTGCCCTCCAGAAAAGGACCAGCATTCCTCAAAGCAGTGGGGGCATCAAGTTTGGTGATGACTGGAAGAAGTGCCTGGAGCTTCCTCCAAAAGACACCAGGATGAGAACCGCGGATGTGACATCAACTAAGGGAAATGAATTTGAAGACTACTGCCTAAAGCGGGAACTGCTAATGGGAATCTTTgaaatgggatgggagaaaccGTCCCCTGTCCAGGAGGAGAGCATCCCTATCGCTTTGTCAGGCAGAGATATTTTGGCTCGGGCCAAGAATGGCACGGGAAAAAGTGGAGCCTACCTCATCCCTCTCCTGGAGAGGATAGACCTGAAGAAGGATCACATACAGGCCATAGTTATGGTGCCAACAAGAGAGTTGGCCCTGCAAGTGAGCCAGATCAGCATTCAGCTCAGTAAGCACCTAGGAGGGGTTAAGGTCATGGCTACCACGGGTGGCACCAACTTGAGGGATGACATCATGCGTCTTGATGAGACAGTGCATGTAGTGATTGCTACACCAGGCAGGATACTAGACCTGATCAAGAAGGGTGTGGCGAAAATGGATAAGGCCCAACTGATTGTGATGGATGAGGCAGATAAACTGTTGTCCCAGGACTTTGTGGTCCTGATTGAAGATATAATCAGCTTCATGCCAAAGGACCGTCAGATCCTGCTTTACTCTGCCACTTTCCCAATCAGTGTGCAAAAATTTATGAACAAACACCTGAAGAAGCCTTATGAGATCAACTTGATGGAAGAACTGACCTTGAAGGGCATTACTCAGTACTATGCCTATGTGACTGAAAGACAGAAGGTCCACTGCCTCAACACACTCTTTTCTAGGcTTCAGATCAACCAATCTATCATCTTCTGCAACTCCACCCAGAGAGTTGAGCTTCTGGCCAAGAAAATCACCCAACTGGGTTATTCATGCTTCTACATTCATGCAAAGATGATGCAGGAATACAGGAACCGTGTGTTCCACGACTTCAGGAATGGATTGTGCAGAAACTTGGTCTGCACAGATCTATTCACTCGGGGAATTGACATTCAGGCAGTAAATGTGGTCATCAACTTTGACTTCCCAAAAAATGCAGAGACCTACCTGCACCGCATTGGCAGATCAGGGCGTTTTGGTCATCTGGGTTTGGCCATCAATCTGATAACTTCAGAGGACCGCTACAACCTGAAGAACATTGAGGATCAGCTTGTCACGGACATAAAGCCCATCCCCAGCAGCATTGATAAGAGCCTGTACGTGGCAGAGTTTCACTCGGTTGACCCAGATGATGATGAGAATGACTATGATGACCACGGTGGAGCCAAAAACAAGGAACTGGGAGGAATCTGAGTGACTGgaGAAACGCGGCGCCTGGCATTCATGACACAATATTGGCTATGCATCCCACAAGATTCCAAGTCATGATTTCTGTTCCCTAGTTTGTCACCCAAATGGTCTATTTTAGGTTTCTTTTCATTCCCATTTATAGTCTACAGCAATCTCCAGTTCTGTCTGTGCATATGTTAAACTGGTATCTTCCCACTGCCACTTCAATCAGTTGATCTTTCTGCCACACTGCCAGAGATGGTCACTGTACATGTGATTTGGGCTTTTGCTTAAGtctgtcattgaactcagccaCTCTTGACAATAGATGGACATTGTCAtcgattgtttttttgttttgtattttggtaCTTTGCTGTAAGAATGAAAATGTGAAACCAAAGGTAGATTTGGAGGATAGAGCCCTGCTCACGTCCTTGCTGTGCAGATGAACTACATATGGCAGTGTGCACGTCCTTCTGCCATTCCTTTTGAGCAGATGCTTTAAAGGAAActccttttttaaacaatttacaCTCAGTGGCTACTTTATTTAGATGGCCTGAATCTTTTTTTGTGCCAtggattcaacaaggtgctggaaacatTACTTAGACAAGTTCATGTTGAGATGATAGCCTCATGCAGTTGCTGCAGATTTGTCAGCTGCCCATTCATGCTTCACATTTTGTGTTTAACCCCATCGTAAACGTGTTGAATTGAGATCTGGAGACTATTTCAGTAGactcattgtcatgtttgaGATACTGTGTTTTGTGATGTGGCATGATGTTCTGCAAAGAGATGGCGATTAGAAGATGGTTGGActgtggtcataaagggatgcaCATGGGACAGGAACAATACTCAAGACTTTTGCGTTTAAACGATGCTCGGTTTGTATTGAATGGGCAAAAGTTAACATTACACCGCCACCATCAGCCTGAAATGTTGAATTCATCtttacaccaaattctgacCCTACCATGTGCCTCTTGCAGCAGAACTCGACATTCAaaagaccaggcaacatttttccaatCATCTGCTGTGCGGTGTTGGTGAGCCTGTCTACTCTTGCTTCAATTTTCTTTGTCTGCATACCTCTGCTGTAACATGGTTATTTGTTACGGTCTCCTTCCCGTCAGCTTGAACCAGTCTGGCCATTCTCCTCATTAACAAGGCACTTTTGCCCTCACAGCTGCCATGCGTGGgatgttatatttttttgtttgtttgtgtgtgcctgtaaaCCCTATAGACTTGTATGTGAAAATCCCAGGAGATTAGCACCAGCAATCATTCCACTGGCAGTCACTTAAATCACATTTCTTCACTATTCTGATGTTTGGTCAGAACAACTgaatggtttgaccatgtctgCATGCTTTTATGCATTGAGTGGCTGATTTAGATACTTGCATTAATTAGGAGTTGTACCTAATAATGTGGCCACTGAGTTAAGCTTTTGTTATCATTCCGTCTTggtcataaaaaaacattttgcccACCAAAACTTGGGGATGCAGTGGTAAAATGAGGTACATTGTACACACATCCATAGTCTAACAATATTAACATCCTTCAAAAGGTAACCAAAGTTGGAAGAATAGACAGAATTATTTAAGTAAGAATAGAGATGGCTTCATAAACCAAAATGACCACTTTGCTCCGACTGACTAAAAGAGGGCTGCTATGGTGCTCCAGCACAGAGCACCTGAAACAGTGTTGCTGATAGTCAACTTGCTAGTTTTttcatattatagtatttaCTACAGAACATTTAAATATGACAGTGTAATGTCAGACACTACAGTGCATTTTGTCAAAGCACAGATCCAATAGTGACCATAAGTCAGTATTTAATTGTgaaatttcttttgtttcctttttaagCCATAGCACCAGGCAGCATTTTCTCAGGTATTGAGGTTATCAGTAATTAACAAGAGGGGCCTAGATTCTGAGTCCCTTCTTCCCTCCAAAGTGCCTTAGTCTAACGTCAAACCTGTACTTAGCCCAGGCTCTTGTCCCGAGATTGTATTGAAGGTAAAATGGCACCCAAATGATTTCTTATTAGTTTATCAGTTTTGAAAGCACAGTTATAGTCTGAAGGATTTGCAGTTTTCCTTATTTGTAAGAAATGCATTTGTCTCATGAGGAATTGTAAACATGACACATGATTGTGTGACTATATTACATCATTGGACTTATTGACTTCAGCACaaaaaatacatgtatttaaaatttaaaacaatACTGTGAAATTTTCAGCTGACTTTTTCTTGGCTGACCATTACGTTACTGCCAAGCACCAGCAGGGAAGGGACCCATGTGTGTGCCCTCTTCTAAAGCATCTGAAGTAGTAATTAGCCCTAACTTTAATGTCGAACTCTGCAGTACCCTTGTTGATAGATTTTGGTTCCCTAATTCTTTTAGCCTCAGTGCAGGCAACAGTACATGACCATTTTCTGAGTGGATTTGTAACCTGAGACCATTTGTTCCATCACTGTATTTTGAAGAAATTAATACCTTCATGACTTGATGTCCAGATGCTTTAAGTAGACAGACAGCCAACAATTTTCTGTTAAATGTGTCCATGCCAGCGcctaaaacaaattaaagtctAACTGACTAAC

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101701 lncRNA upstream 45861 25374207 ~ 25376989 (+) True LOC120561674
TU101653 lncRNA upstream 75634 25346263 ~ 25347216 (+) True G75977
XR_005639632.1 lncRNA upstream 86892 25335016 ~ 25335958 (+) True LOC120561670
TU101606 lncRNA upstream 278046 25144579 ~ 25144804 (+) True G75943
TU101605 lncRNA upstream 278576 25144058 ~ 25144274 (+) True G75942
TU101753 lncRNA downstream 106128 25542399 ~ 25596454 (+) True G76055
TU101801 lncRNA downstream 169879 25606150 ~ 25617478 (+) True G76083
TU101800 lncRNA downstream 174130 25610401 ~ 25617478 (+) False G76083
TU101807 lncRNA downstream 188159 25624430 ~ 25696175 (+) False G76089
TU101811 lncRNA downstream 188159 25624430 ~ 25701085 (+) True G76089
XM_039806603.1 mRNA upstream 278 25400240 ~ 25422572 (+) True bcl3
XM_039804859.1 mRNA upstream 42052 25374712 ~ 25380798 (+) False LOC120561674
XM_039804858.1 mRNA upstream 42052 25378278 ~ 25380798 (+) False LOC120561674
XM_039804857.1 mRNA upstream 51794 25368329 ~ 25371056 (+) True LOC120561673
XM_039804860.1 mRNA upstream 60537 25360758 ~ 25362313 (+) True LOC120561675
XM_039806605.1 mRNA downstream 567 25436838 ~ 25443829 (+) True tomm40
XM_039806610.1 mRNA downstream 42990 25479261 ~ 25480707 (+) True LOC120562741
XM_039806611.1 mRNA downstream 43015 25479286 ~ 25480707 (+) False LOC120562741
XM_039806607.1 mRNA downstream 49288 25485559 ~ 25487175 (+) False apoeb
XM_039806609.1 mRNA downstream 49657 25485928 ~ 25487892 (+) True apoeb
TU101448 other upstream 433731 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 986031 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 986080 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 1368522 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 1390405 24031390 ~ 24032445 (+) False atn1
TU101741 other downstream 55543 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 66329 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 703630 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1371847 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 1447179 26883450 ~ 26886546 (+) True G76355

Expression Profile