RNA id: XM_039806617.1


Basic Information

Item Value
RNA id XM_039806617.1
length 2408
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120562747
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28074190 ~ 28077263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATTTTTCTTTAgaacagtgacaaaaaaaaccatTGCCCTCCTTTGACCATGGACTATAAAAGTTAAGCTTCTGTCACGCACTGTTTACTCGTTACAGAAACGAGCTCAAAGCCCTCGAGGAAACGATGAGCGTTGGTTTATCGGTTAGGACAGGAAAACCACGCTGTCTCGCCGGGTTTGTTCCAGGCCACTGACCCAATAAGAAGCCTTCGTCTCTTGCGGTTCTGGCTGCCTGACAGATCAAACCTCCTTGTGTCACAGTGTATTCGTTCCCCATGGAGTCAAGGACATAATGTGATGCATCTTGATCCCTGACTGACTGATTGACTTACACCGAGGCCACCATGCAGGTGTGCCATACTGGACTTTGTCTGCCTGTCTACGTCATTACCTTTGTGCTGGGCTTCCCAGCCAACGTCCTCGCCTTCTATACCTTCTGCAAGAAAGTGAGGCAGAAACCCACCCCGATTGATATCCTGCTCCTCAACCTGACCATCTCtgacctcctcttcctcctcttcctgccCTTCAAGATGCAGGAAGTGATAAACAACATGCGGTGGGACTTGCCCTACGCCCTCTGCCCGCTGTCTGGCTTCATCTTCTACATGACCATCTACAACAGCACCTTCTTCCTCACTGCGGTCAGCGTAGAGCGCTACCTGGGCGTCGCTTTCCCCATCCAGCACACCCTGAAGCGGCGACCCGTGTATGCTGTCGCCGCAAGCATCTTCTTCTGGATTTTCTGCTTCATCCACCTGAGCATTGTGTTCATCGTGCCCTTTATCGGCACAGAGGACTCGCCGAATACCACCTCAAGCCACAACGTCTCAGCTAGCTCTGCCGTTGGTGACGCAAAGATGGAGGTGTGTTATGCGAATTTCACAGAGGCTCAGCTGAAGGTCCTCCTGCCTGTGCGTCTGGAGCTCTGCGTGGTACTTTTCTGCATCCCTTTCCTGATAAGCAGTTTCTGCTACATCAACTTCATCAGGATTCTATCCAAGCTGCAGCACATTGACCGGCGCCGGCGCCTCCGGGCCATTGGCATGGCTTTAGGAACACTGCTGGTGTTCGCTTTATGTTTTGGCCCCTATAACATGTCGCACATTATCGGATTTATTACATGGAAAAGTCCCGACTGGAGAGACAAAGCCCTGCTGTGCAGCACCTTTAATGCTTGTCTCGACCCTCTTATTTTCTACTTCTCTTCCTCTGCTGTGAGAAAGACTGTGGGTAGTGTGATGGAAGGGGTTAAGAGTCGCCTAAACAGGTGCATGTCCTGTCACATGCTCTGGGCCTCGAGGGGTGGGATTAACAAGACTGCAAAAGATAAGGAACACAAACAAGAGGAGATCAATGCTATCTAAGCTGACTGAAAGGAAGCTGTGAGCAGCTGCCTTCCTAAATTTGTTATTCCTTTATCCCCGGAAGCAGGAAATTAATGGcatgtttatttgtttacacGTGAGCAAATGACTTGGCATACTGCATACAGTGCAGCACGTCTCTGTTTGACTCTCTGATGAACTTTCTACGAGACAAGAGAGGAAACCTTCAGTCCGTCTGAGCAGGTCACAGCAGTGTAATGAGAATGGCACAGAGACAGGCTACTTTGAATCGCCATAAAATTAAAGACATTTCTCCGTTAACAGCAGGATTTCCTAAGATCTCCATTAATGCAGTCAGTgttgtggagcataaaaacgaATATCGTACCAACAGCTGCGGACATCAGCTCTAAGCACTAAGAGAAGTTTGTTTTTCTAACAGCTTTGACCATGAACAGGCTATGTCATCTGATGCAACACCACACTCATTATGCGGGGGtgatgtggtaaaaaaaaaaagagaactgaAGTGTGAGATCTTAAAGAAGATTCAAGCGTGTTGTGACCTTGTACACCCTTACAAACACATTCATGTAGCTAATATACAGCTTACAGCTTTTTGTGCAAACttatatatttgtgtattttgtattttgcctCACATGGCTTTTTCGTGCAGATTTTAGTTTACATGATTTTATATTCATACTATGATTTCATTATATGGCCATATTTAAATCATATGTGATACTAAAGTAgcatgtatgtatgaatgtatgtatgaataCATGTCAGATACATCGAAGAGCTGCATGACAGGGGTTGTAATTATGTAAGACAAAACAGAAATACTATTTTCATACGCAAATCATATAAAcgtgtacagtatattttgaaTAATGTATGACTCATAGATTCTTTTGTATctatgtataatattaatgatttgttttttaaggGTAAGTGACGAATGTGAACATGTACATGCAAGTAAACATCTAATGCattacaaaaatgtacatgtgatCACCATATCAGTCATGTGTACAATATATACCTTTTAGATATGCATACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102354 lncRNA upstream 46697 28025609 ~ 28027493 (+) False LOC120561771
TU102356 lncRNA upstream 50823 28020998 ~ 28023367 (+) False LOC120561771
TU102355 lncRNA upstream 90515 27982146 ~ 27983675 (+) False ago1
TU102357 lncRNA upstream 111224 27962738 ~ 27962966 (+) False ago1
TU102347 lncRNA upstream 135528 27934795 ~ 27938662 (+) True G76510
TU102444 lncRNA downstream 156349 28233612 ~ 28236339 (+) True G76579
TU102445 lncRNA downstream 156349 28233612 ~ 28236339 (+) False G76579
TU102484 lncRNA downstream 214737 28292000 ~ 28292560 (+) True G76608
XR_005639885.1 lncRNA downstream 254656 28331919 ~ 28346792 (+) True LOC120562953
TU102543 lncRNA downstream 337667 28414930 ~ 28415653 (+) False drd2l
XM_039806614.1 mRNA upstream 15030 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
XM_039804993.1 mRNA upstream 46664 27984053 ~ 28027526 (+) True LOC120561771
XM_039804991.1 mRNA upstream 90476 27962690 ~ 27983714 (+) True ago1
XM_039804992.1 mRNA upstream 90476 27962698 ~ 27983714 (+) False ago1
XM_039807243.1 mRNA upstream 188726 27867444 ~ 27885464 (+) True fam110d
XM_039806634.1 mRNA downstream 185604 28262867 ~ 28272836 (+) True etfb
XM_039806615.1 mRNA downstream 196810 28274073 ~ 28279197 (+) True vsig10l
XM_039804678.1 mRNA downstream 206132 28283395 ~ 28287777 (+) True lim2.5
XM_039806915.1 mRNA downstream 270347 28347610 ~ 28354162 (+) True LOC120562954
XM_039806916.1 mRNA downstream 270349 28347612 ~ 28354162 (+) False LOC120562954
TU102349 other upstream 121610 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 785733 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 1187644 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 1258799 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 1931563 26139901 ~ 26142627 (+) True G76192
TU102453 other downstream 164520 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 206013 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 443436 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 476309 28553572 ~ 28569866 (+) True G76714
XR_005639746.1 other downstream 723388 28800651 ~ 28834170 (+) False LOC120562342

Expression Profile