RNA id: XM_039806643.1


Basic Information

Item Value
RNA id XM_039806643.1
length 601
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120562755
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42527496 ~ 42529482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcattcagATATACCTCCTGCTGCTGACTCTAGAcctcatctctctcctgtcattcagATCAACATGAAGATCTCTATCTTTGCCGGtgttctgctgctctctctgtgcCAACTGTGCAGTTGTGTTGCCCCTGCTTACCATCTTAGGGGGATTGATGATAACAAGTTTGAACGAGAGCATATCGTGGCTAACCTATGCACCCAGGTGATGATGGACAGAGGATTCGCTGTCCTCGACAAAACCACCTGTAAGCCGGAGAAAACCTTCATCAAAGCTCCAGTGGACGAGGTCCGAGCCGTCTGTGGGGGGAAAGGAAGTGGAGTCAGCAAAGAGAACTTTAAACTGGTTGAGTGTAAAGTTGATCCTGCTCATAACAAGCCTCCCAACTGTCAGTACacggtggaggaggtggagaagaaAATCCTGGTCACCTGTGTCAAAAACCAACCTACTGAGTTTAAAATAcaagagtaatctgttactacaactgatgaatcagagtaatctgttactacctgatgaatcagagtagtctgttactacctgatgagtAACTTGTGTCTCCTGTTGAATAAAACACGTGACAGTGTAACTCTGGG

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0004518 nuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107988 lncRNA upstream 48432 42362740 ~ 42479064 (+) True G80473
TU107980 lncRNA upstream 51242 42338528 ~ 42476254 (+) True G80465
TU107993 lncRNA upstream 78523 42374477 ~ 42448973 (+) True G80476
TU107900 lncRNA upstream 104808 41919467 ~ 42422688 (+) True G80406
TU107903 lncRNA upstream 131709 42110992 ~ 42395787 (+) False G80409
TU108367 lncRNA downstream 31834 42561316 ~ 42561622 (+) True G80695
TU108383 lncRNA downstream 44512 42573994 ~ 42575862 (+) False G80702
TU108386 lncRNA downstream 44512 42573994 ~ 42936865 (+) False G80702
TU108388 lncRNA downstream 44512 42573994 ~ 42720940 (+) False G80702
TU108389 lncRNA downstream 44512 42573994 ~ 42593577 (+) False G80702
XM_039804728.1 mRNA upstream 676794 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 834491 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 834491 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 838767 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 950993 41551091 ~ 41576503 (+) True LOC120562406
XM_039806644.1 mRNA downstream 3442 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 6210 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 106343 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 134036 42663518 ~ 42666003 (+) True LOC120562768
XM_039806651.1 mRNA downstream 234921 42764403 ~ 42768664 (+) True LOC120562762
TU108350 other upstream 41487 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 520902 42003373 ~ 42006594 (+) True G80410
TU107913 other upstream 522880 41939498 ~ 42004616 (+) False G80410
TU107784 other upstream 1104918 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 1104918 41421356 ~ 41422578 (+) False G80337
XR_005639823.1 other downstream 3442 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 3938 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 3938 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 254013 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 254013 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile