RNA id: XM_039806644.1


Basic Information

Item Value
RNA id XM_039806644.1
length 2204
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120562757
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42532924 ~ 42539601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGAACTTTCATTGCAACGCCTAAAAATCAAGGAGAACACTCAGTCCTGCTAGCCCCAATGTTGAGGTGCAGGACAAAATGTCTAAAAGTTGCCCGGAGCTGCTGAGAGAAGCAGCAAATTTGATTGAGGAAGCTCTGAGCAGAAGTCCAACGGCTCCCAGCAGATACCGGCGTTCAATCACGTACACCTCTCCAAGgAGAGCTCACGTCCTGCCTCTGGTCCAGTCATCCCCTGCATCACTTGTCAGAAGGAAGTTCCCTTTTCAGAGATGAAGCTGCACAGATTGAGCTGCAATGGaaTGGAAGCTTATTAAAGAACCCACTCAAGCTGCCAAAGTTTTCAAAGGGAATCTGCTAAGGGAACATGCAACTGGGAAACCACTTAGAATGAAGATGGATGTAAGGGACTCTGAAGAGGACAGGGAACGGGAGCTTCTCTTATTCTATAAACAGCAGCAAGAATGGGCATGTCCACTTCATTGTACTCTGGTTGGTGATGTTGCTATCGGAGAGGGAGTGATGCGGTACTTTATGACAACAATCATATCCAAACTCCAGTTTGGATTCAGTCTAGATCTTGGAGGAATGGGCCGAACACTGCTATTTGAGGGTGAACCTGACCATCTTGTTCCAGCAGCATCAGAGGCACTTATTGAAAGTAACCTCTTCCGGGTTGCAGGAAGGATGTTGGCCCACACCTTTCTCCATGACAGTCCCCATGTCACAGGATTAAGTCCTGCTGTAATTCATGTACTGTTCAATGGGGACTCTGAAATGGCAACTGTTGATACAGAAGACTGTCCTGATCTGCACATCAGGAGCATCATAGAACTGCTTGAACATGAAGAACTTACACCGGAACAGAAGGACACAGTTTCAGATCTTTCCATGTCTTGGGATCTTCCGGCCGTCACCAAAACAAATCGGAGATGGCTGCATAACAAACTTCTACTCCATGCAGTTAAGGATTTGGGCTGTAATatgggtctgtctgtctcttacgTCGTTGGGAGGACCATGCGCCAAATTAAACAGTTGAGAAAGGGACTGAAAGATGTGATGGTATGACCCCTGCTGACATCTTGGCCAGATGTTGTCCCACTTCTTTTCCCCAAAATGGCTGAAATGCAGTTTACACCCCAGaTGCTCCTAGAAAAAAATCACATGGCCAGTTGAGGACAGTGATGATGAAGACTTTGACTTAGACACCACCTGCCGCATCACTGGCTTTCTAAGGATGTTCATTGAAATAGcTTCATCAGGTACTCTGGCCCAGCTGCTGACATTCTGGGTTGGCTGGGAGATGCTTCCTCCTGAACTGAGAGTGGAGATTTCTGGGGGAACCCTTCCTACGTCCTCCACATGCTTTGGAACACTAAAGCTGCCAGCTCATTTCAAAATCGACATGGACTTTGAGAAAGCACTTGTCGCTGCCATAAAAAGTACTGGATTTGGGCTTGTTTAAGTTTTTTCAGACAGATgtcaattagggctgggcaatgttTCAATATTATATCTATCGTGATataagactagatatcgtcttagattttgaagAAGTGTAATATCGTTACATGGTAAGTTTAGTCTTCTCCTGGTttcaaaggctgcattacagtaaagtgatgtcattttctgaatttaccagactgttctagctgttctattatttgcctttaaccacttagtcattatatccacattatgaTGGTTATTTATCCGAAATCTAAATGTGGAAGCTATTTTGTGAatgcaccaattgtcaaccttaCGATATCGttgcaatatcgacatcgaggtgtttggtcaaaaatatcgtgatatttgattttctccatattgcccagccctaatgtcaATGCATACACAGTTCAGATGAATTGACACAAGTTCAGTGTCTTTGAAAACATGAACACACTGTATtgacagtagtagtagtagtagtagtagtagtagtagtagtagcagtagttgacctttttttttattctacatattttttccatttactgaaatcaaactgTTCTGCACCTTCAGTGCTAACAGTACAGCATTCATGTTAGTCATTCTGTGGACCATAATGAGGAAGGAAGCTTCAAAGaaacagctttttttcccctttcttttTCGTTTTTTAAAAGGAAAGCAAACTTTCAGTTTTTCCTTGCTTGTTCtaacacaacaaataaaaacatggttTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107988 lncRNA upstream 53860 42362740 ~ 42479064 (+) True G80473
TU107980 lncRNA upstream 56670 42338528 ~ 42476254 (+) True G80465
TU107993 lncRNA upstream 83951 42374477 ~ 42448973 (+) True G80476
TU107903 lncRNA upstream 137137 42110992 ~ 42395787 (+) False G80409
TU107954 lncRNA upstream 447560 42083622 ~ 42085364 (+) True G80444
TU108367 lncRNA downstream 21715 42561316 ~ 42561622 (+) True G80695
TU108383 lncRNA downstream 34393 42573994 ~ 42575862 (+) False G80702
TU108386 lncRNA downstream 34393 42573994 ~ 42936865 (+) False G80702
TU108388 lncRNA downstream 34393 42573994 ~ 42720940 (+) False G80702
TU108389 lncRNA downstream 34393 42573994 ~ 42593577 (+) False G80702
XM_039806643.1 mRNA upstream 3442 42527496 ~ 42529482 (+) True LOC120562755
XM_039804728.1 mRNA upstream 682222 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 839919 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 839919 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 844195 41684777 ~ 41688729 (+) False LOC120561589
XM_039806658.1 mRNA downstream 96224 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 123917 42663518 ~ 42666003 (+) True LOC120562768
XM_039806651.1 mRNA downstream 224802 42764403 ~ 42768664 (+) True LOC120562762
XM_039806649.1 mRNA downstream 248108 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 248135 42787736 ~ 42800596 (+) False LOC120562761
TU108350 other upstream 46915 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 526330 42003373 ~ 42006594 (+) True G80410
TU107913 other upstream 528308 41939498 ~ 42004616 (+) False G80410
TU107784 other upstream 1110346 41421356 ~ 41422578 (+) True G80337
TU108439 other downstream 243894 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 243894 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile