RNA id: XM_039806651.1


Basic Information

Item Value
RNA id XM_039806651.1
length 2071
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC120562762
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42764403 ~ 42768664 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGACCCCCCCACCTTTGTCAGCTATATAGGAGGCTGGGACAAAGGCAGCAGACGTCAACCTAACTCAGCTCACAGAGAGGAGGGCTATATACACTTCCAAGGTGAGGATGACATCCACGGCAGATCGACTGGCCCGTCAGCAGGACAGGGAAAAAGGCATTGGCACAAACAAGAAAGCAGTGAAGTTCTCCCAGCAGGATTATGAGACTCTGCGCCAGCAGTGTTTGAAGAGTGGACGCCTGTTTGAGGACAACTGCTTTTCAGCTGAGCCCACATCACTGGGCTACAAGGAGCTGGGACCAGATTCATCCAAAACCAAGGGGGTTGTTTGGAAAAGGCCAAAGGAGCTGTGCTCAAACCCAAAGTTCATTGTTGATGGAGCCACAAGGACGGACATTTGCCAAGGATCTCTGGGTGACTGCTGGCTTATGGCTGCAATAGCCAGTCTGACTCTAGACCAGCAGATCCTGGCTCGTGTAGTGCCCCAGGAACAAAGTTTTACTGAAGGTTACGCCGGGATATTTCACTTCCAGATCTGGCAGTTTGGTGAGTGGGTGGATGTGGTGATCGATGACCGTTTACCAACAAGAAATGGAAAGCTGCTGTTTGTTCACTCAGCGGTGGGCTCAGAGTTTTGGAGCGCGCTGCTGGAGAAGGCctacgccaaGTTGTATGGCAGCTATGAGGCCCTGACAGGAGGATTACCTACTGAGGGTTTTGAGGATTTCACAGGAGGGATTGCAGAAGTATACTACTTAGACAAAGCTCCACCGACGCTCTTCCAAATCATGCAGAAGGCCATGAGCCTGGGTTCACTACTTGGTTGCTTTATTATTCAAAAGACCAGTGCCGAGACAGAGGCAGTTACACCTCTCAAACTTGTCAAGGGACATGCATACTCAGTCACTGGTGCAGAGGAGGTTCATTTCCAAGGTAAGCCGGTTCAGCTGGTTCGCATCAGGAACCCATGGGGTCAGGTGGAGTGGACTGGGCCTTGGAGTGATGGGTCCATTGAATGGAACCATATCAGCAAAGATGAGAAATCAAAGTTGAACCATGTGGCTGTTGATGGTGAATTCTGGATGTCCTATTCAGACTTTATCAAGCAGTTCCTCAGGCTGGAGATCTGTAACTTGACCCCAGACGCGCTCACGTGTGATAAAGTGGGCCACTGGAACCACTACCAGTATGAAGGGATGTGGAGGAAGGGATCTACTGCAGGCGGCTGCCGCAATTTCTCAGCCACATTCTCGTCCAACCCTCAGTTTGTGGTGTGCCTGGAGGATGTGGATGATGATCCCCTGGATGGGAAGGATGGATGTACCTTTCTGGTTGGGCTCATGCAAAAGGATGGGCGACAGCAGAAGAAGCTCGGCCGCAACCTTGAGAGCATTGGCTTTGCCATTTATAAGGTCCCAGATCAGTACAAAGGCCAAAGCAATCTTCACCTGGGTCCAGATGTCCTGCTGCGACAGAGACCTGTGGCCACGAGCTCCTTCGTCCCTACACGGGAAGTGTGCAACCGCTTTAAACTTCCTCCAGGAGAATATGCCATTGTTCCCTCGACCTATGAGCCTGACAAGAATGGCAGCTTCCTGCTCAGGGTGTTCTCTGAGAAACCGGCTGCAGCCAGAAATGTTTAGGGCTCTGGAGAGAGCTGACACAGGGGAGATTGAGCTGGATATGCAACAGTGGCTGTGCCTGGTGGTCCTCTGACTCTGGAGACAAGACAACCGAGATGATACCTGCTGGAGGATTAACAATACATTTATTGAATTCAccaaaaaatcacatttattttttacaaactaAGTATACTCAATGACAGTTCACATGCATTCTATAAGTTCCAAATGCTTGAACATggctaaaatgtgtttgttaaTTTGAATCATATTTGCTGAACATAAACATGGGGACATGTTGTATCAGTCACATGTATTATTccatttttaaatcttttttgtgTGCAGCGGGAACAATTCTGTCTTGTTAGTTGGTGTTTTTGCTCTTTTAGGTGTTGCAAAACTTCTGTGAAAtgcaagaaaataaagaaactaaCAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108422 lncRNA upstream 5777 42740826 ~ 42758626 (+) True G80719
TU108420 lncRNA upstream 20750 42696625 ~ 42743653 (+) True G80717
TU108388 lncRNA upstream 43463 42573994 ~ 42720940 (+) False G80702
TU108390 lncRNA upstream 43463 42573994 ~ 42720940 (+) False G80702
XR_005639825.1 lncRNA upstream 43549 42719416 ~ 42720854 (+) True LOC120562769
XR_005639839.1 lncRNA downstream 10291 42778955 ~ 42780523 (+) True LOC120562780
XR_005639830.1 lncRNA downstream 14847 42783511 ~ 42786380 (+) False LOC120562772
XR_005639829.1 lncRNA downstream 14871 42783535 ~ 42786380 (+) False LOC120562772
XR_005639831.1 lncRNA downstream 14875 42783539 ~ 42786380 (+) False LOC120562772
XR_005639828.1 lncRNA downstream 14878 42783542 ~ 42786380 (+) True LOC120562772
XM_039806659.1 mRNA upstream 98400 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 120413 42635825 ~ 42643990 (+) True LOC120562767
XM_039806644.1 mRNA upstream 224802 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA upstream 226121 42535692 ~ 42538282 (+) False LOC120562757
XM_039806643.1 mRNA upstream 234921 42527496 ~ 42529482 (+) True LOC120562755
XM_039806649.1 mRNA downstream 19045 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA downstream 19072 42787736 ~ 42800596 (+) False LOC120562761
XM_039806652.1 mRNA downstream 56934 42825598 ~ 42831659 (+) True LOC120562763
XM_039806655.1 mRNA downstream 56934 42825598 ~ 42831659 (+) False LOC120562763
XM_039806654.1 mRNA downstream 56934 42825598 ~ 42831659 (+) False LOC120562763
XR_005639823.1 other upstream 226121 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other upstream 226121 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other upstream 226121 42533420 ~ 42538282 (+) False LOC120562757
TU108350 other upstream 278394 42485335 ~ 42486009 (+) True G80682
TU107914 other upstream 757809 42003373 ~ 42006594 (+) True G80410
TU108439 other downstream 14831 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other downstream 14831 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile