RNA id: XM_039806652.1


Basic Information

Item Value
RNA id XM_039806652.1
length 2002
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120562763
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42825598 ~ 42831659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCACACTTCACAAGGAAGAGCTGAGAGGTGTAGTGTGTTACAACACGCAGCACGTGCACTAAACTGGGAAAGATCCTGACGATCATCAACAGCCCCTAGTGCAGATCAACTAACGCTACCCTTCTTACTTACTTAAAAAAGAATGATGACTCCATCTGTGGTCTTTGTCTTGCTGGCTGTTCTAGGACAGACCAGTGCCAAATTTGATCCTAATATTGCCAGAGGTGGAAACGTGATTCAGTCCTCCCAGTATTTGAATGCCATCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCGACTGGGCACAGGGATCCTGTACCCACACTAACAATGCTATAAATCCATGGTGGAGACTGGACCTCCTAAAGACATATCAGATCAACACAGTCACCATCACCAACAGAGGAGATTGTTGCCACGAAAGAATTAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAGTGACAATGGCAACAGTAACCCCAGatgTGCTGTTATCTCATCTATCGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATATCAACATTGTGATTCCTGGAAGACAAGAAACCCTGACACTGTGTGAGGTGGAAGTCACTGGTCTGGCTTTAGGTAACACTGCTCCAACTGATACTAATATTGCCAGAGGTGGAAACGTGATTCAGTCCTCCCAGTATTTGAATGCCATCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCGACTGGGCACAGGGATCCTGTACCCACACTAACAATGCTATAAATCCATGGTGGAGACTGGACCTCCTAAAGACATATCAGATCAACACAGTCACCATCACCAACAGAGGAGATTGTTGCCACGAAAGAATTAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAGTGACAATGGCAACAGTAACCCCAGatgTGCTGTTATCTCATCTATCGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATATCAACATTGTGATTCCTGGAAGACAAGAAACCCTGACACTGTGCGAGGTGGAAGTCACTGGTCTGGCTTCAGGAAACACTGCTCCAACTGATACTAATATTGCCAGAGGTGGAAACGTGACTCAGTCCTCCCAGTATTTGAATGCCGTCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCGACTGGGCACAGGGATCCTGTACCCACACTAACAATGCTATAAATCCATGGTGGAGACTGGACCTCCTAAAGACATATCAGATCAACACAGTCACCATCACCAACAGAGGAGATTGTTGCCACGAAAGAATTAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAGTGACAATGGCAACGATAACCCCAGatgTGCTGTTATCTCATCTATCGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATATCAACATTGTGATTCCTGGAAGACAAGAAACCCTGACACTGTGCGAGGTGGAAGTCACTGGGACAGTATAATATGAAACTGATTCTAACCCTAAAACCCTTATTTCTTAGTTTATTTTCACTTATTCTAACGCTAGTCTATGCAATTTTGCCTATTTAGTGTGTTTTTGCTTCGCacacagatattttaagtaAGACACTTTGTATTACATATCATCAGGTCAGGACAATCGTATGCTGAAGCTTTATGTAAAACTGATACATATGGTTGTTTTATACATTAGCTAACATAAAATAAAGGCTATTGTTCAAATTTAAATAGAGAACAAAAGAGATACAGCTCTAGTAACTGATTATACCTACTACCTACTATATGCCATGAAAGCGGCGAGAGATGCATTATTAAAAAGAACTGTGGGAAAAATAAAGGTGAGAAATGATATACAGTGCACTGACTGCATTGTATTTGTTGTAATTTTTCTTGGGCTTGCTTCTATCTACTGTACTTATATACTTGCAAAATAAACATTGCTTTTAAagctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639830.1 lncRNA upstream 39218 42783511 ~ 42786380 (+) False LOC120562772
XR_005639829.1 lncRNA upstream 39218 42783535 ~ 42786380 (+) False LOC120562772
XR_005639831.1 lncRNA upstream 39218 42783539 ~ 42786380 (+) False LOC120562772
XR_005639828.1 lncRNA upstream 39218 42783542 ~ 42786380 (+) True LOC120562772
XR_005639839.1 lncRNA upstream 45075 42778955 ~ 42780523 (+) True LOC120562780
XR_005639840.1 lncRNA downstream 10916 42842575 ~ 42845934 (+) True LOC120562781
TU108445 lncRNA downstream 18938 42850597 ~ 42955526 (+) True G80732
XR_005639832.1 lncRNA downstream 24778 42856437 ~ 42863102 (+) True LOC120562773
TU108462 lncRNA downstream 44127 42875786 ~ 42876732 (+) True G80737
XR_005639838.1 lncRNA downstream 55436 42887095 ~ 42888441 (+) True LOC120562779
XM_039806649.1 mRNA upstream 25002 42787709 ~ 42800596 (+) True LOC120562761
XM_039806650.1 mRNA upstream 25002 42787736 ~ 42800596 (+) False LOC120562761
XM_039806651.1 mRNA upstream 56934 42764403 ~ 42768664 (+) True LOC120562762
XM_039806659.1 mRNA upstream 159595 42663518 ~ 42666003 (+) True LOC120562768
XM_039806658.1 mRNA upstream 181608 42635825 ~ 42643990 (+) True LOC120562767
XM_039806647.1 mRNA downstream 75357 42907016 ~ 42912785 (+) True LOC120562760
XM_039806646.1 mRNA downstream 75359 42907018 ~ 42912785 (+) False LOC120562760
TU108439 other upstream 39193 42783495 ~ 42786405 (+) False LOC120562772
TU108440 other upstream 39193 42783495 ~ 42786405 (+) False LOC120562772
XR_005639823.1 other upstream 287316 42532924 ~ 42538282 (+) False LOC120562757

Expression Profile