RNA id: XM_039806679.1


Basic Information

Item Value
RNA id XM_039806679.1
length 5121
RNA type mRNA
GC content 0.48
exon number 11
gene id znf574
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24771509 ~ 24791556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCCAAGTGGTAAAAGGGGTTTAGTCGCTGGCTAATTTGGTTTCTGCACCCGCTATCAAGGAATGATCTGACGGTTGTTTTATTAGCTTCCGAGCTAGCAAGACAGCTAGCTACCACGCCGGGGGCACGTTAGCAATGTTGCTAGAAAAATGGCCATCGTTGCATGTTAGCAACACAGTAACGTTACTGGTCAGAGATAACACAGTTAGCTGCTAACCGTTAGCTTTGAGTCGCTGTTGAGTTGCTGTCGGTCGTGCGAGCTCGGGTCAGACCCCAAGCAAAACGAGTCAAAGAAACTAACATGAGGATTGTTATTAGTCGACGATTGCATAAACTAGGAGTAATTGGTATTGTTTCTCGTTCCCCGTGTCCCCTTGCGAGTCAATATCGGGCTGACATTGTTCCTGCAGTAAACACTCATGACTAGCGTTAGCTAGGTTATCCTGTCATGCATGAAAGTTATTCAATGACATATTGACTAACTTTGATTGCTTTTAGGCAAATGTtaattcattcaacctttatttatcctcgAGAGATCATTAAGGGGCGACCCTCATTTACATTGTCATCGAGTCAAATTACCGCCTGGCTCAATAATAAATGCACATTGTAAAAAGCAAATTACAACTAGTGCTTACAGGTAAATAGGTAAAAGCATATGCAGACCACCTCTCATCTGATGGTTTAATGTTACTGCCAGACGGAGGTTGTAGCAGTGTTGCACAAACCAAGCGGTTTGAATCTGACCATCTGTACCCACACAGTGTAGCTTCTGCTGAGAACAAGGGCGTAAACAGACACAGACTTCACTAAACTATCATCCCTACATGGTGCAGTGGGGCTTTATTATGCCATAATTGACGGTTTAAATGATGTGGTtatattctttctttttgtaCTATAAACAAGACCCataaaagaccaaaacaacaATGAATGTATCTCACTTAAGTATTGCCTGTGTAGCAAATGCGTGATAAAGTCTCATAGACCTTCCTTGTTGTCAGAGAACTGTTAAAACACATCAGAGAGTCACGACATTGTACTGAGTGACATGTTACTTCATTACAATGAATGTGGTTACTGTAGTATATTGTTGATCCCACAAACACGTCCTGCTGCTTTAAATACTCACTAAATCTGCAGTTGCAAACAGCCCCCACCTTGGACAAGgtgccttttaaaaaaatataataagaatttttttatatatatatgtgtatgtgtgtgtgtgtgtgagattaatTTTCAAAGAtttacagtagaaacatgggctTGTAGCTGAGTGTCACACAGACATGCTGGGAAGTTGGAAAGCATTAAGAGACAGACTAACagcattgttttggtcttatggGATTTGTCGATGATAACACAAATATGGAATATCGGCAGCTTTATCCTTTAAATCATAGCTTTGTCTGCCAATTAAAATGATCAACCAGAAGGTGTGTCACATTGAAAGGTATTGATGTGTGTCTTTTAGTGTGTTTCTTTGATTTGTAAGGTTCTTTATTCAAAGTATCTGCTGGTGCAATGTGAGGTCTGATTGTTATCCAGTGAGTGGGAAGGATTGCAGACATTGTGTTTGATTAAAGCTACATTCAGCAGCAGCATGAGCTAGACTGCACTTCCAGCGGGTCCAATTACAGCACATATCTAATTGATGTTGGAGTTTAACGTCTGCCCGGCCCATGaaatggcagagagagagagagagagagacttggcAAGGAGAGGGCAATGTTCACAACCTAACTTCAAATCCATGGAGAGTTCGTCAGTCTACATGTGCTTCCCTTGCTACCAGGAGTTCAACACCCTGGAAGAGGTGCTCGAGCACCAGTTGACGTGCACAGCTGAAGATGAACAGACGGAAACACCTGGAACCAACGCTGTCACTATTCCACTGCTACAGACTCGGCAACAGGTAATAAATATATCAAAAGCAGCCCCACAGACTCAAGTCCAAGCAGTACACCCCTCCGTGCAACCTGTTGTCAAGCAGGCTGCAGTCAGTGCAAGTGTGACATCAGACCAGCCCAGAATCCTCTACCAGTGTGGGGACTGTGATGAACTTTTCAAGAGCCTGGACCTTTGGCAGCAACACCGTAAAGAAGAGACATGTCAGCAGTCTGCCTCTGGGAGCAAGCTCCCCGACTCAAATACTGAGCCAGAGACCGCTTCAGCTCAGAGCTCCCATACAACTTCAAATCCAGATGAAACCACATGTGAAATCCTTAAACCCGAACCAGTGGATAATCTCATAGCAGAGGAAGAGAGTCAGCAAGTTGCAGAGACCTCTTCAGCTCAGAGCTATGGTCCTCCTGTTTCTGAGGTGGCCGCCTCGACCTCGAATCAAGAGGATTCGTCTCCCAGGAGGAGAGGGGCAAACAAAAAGCCTAAGCCTGAAccagtgctgctgtgtgtggacTGTGGCTCATGCTTTGGCCTGGTGTCTGAACTAGTGGCCCACCGTAAGACGCAGCATGGCTTTGAGGAAGCTCTGCACCGCTGCTCTGTGTGTGGGGAAAGCTTTCTAAACACCACACTTTTTCTTTACCACCGTAAGCAACACCGGCAGAAAGGCGAAGAAAAGGTGGTCGTGGATCCTGAAGAGACATCAGAGGAAGTTTGTGCTCAGAGCAACAGGACTGATGAGCAGGGCCAGGACGCCACTCCCTCCACCACTAGTGTCACCTCCAGTTTCACACAGCCGGATTTTTTCATGTGCACCCAGTGTGGGGAGAGCTTTAGCGACGAGGGAGGGCTGGGCACCCATCGTATGCAGTTCCATGGCCTAAAGGAGCCACTACATAGTTGCCCCCAATGTGACGAGACCTTCATGAACACCACCCAGTACCTGTACCATCGCCGGCAGCACCGCTTCACGTCAGGGACAGAGGTGGCGGATGGAGCTGAAACTGGTGTTGAAAAAGTCCCCACTAAACCTCAGGATACCCCACAGAGCTCAAAGCGGCTGCTTTCCCCGCCTGCCTCTGCTAGTGAATCAGGTTCACCCCTTCCTAAGAAAAGTAGACCCTCTTTCAGAATCCTAAGTGGCATAAGTGCACTCAGAGgacacaaagacaccaaagacgAATTGGAGGCCAGCACTGCAGCAGACTCGGACAACACCAACCACCCTCCACCTGCCAAGCTGCTGCAGGACTGGGCACGCACACCACTACCCCATGTTTGCCCCTACTGTGGCAAAACCTTCACTCGACGCGTCTTCCTCCGCACCCATGTCTACAGCCACACCGGAGAAAAGCTTTTTACGTGCAAGgtTTGCACAAAGTCCTTCACTAACTCCCAGAGCCTGCTGCGCCACAGCATGAGCCACACGGACAACAAGCCCTTCATCTGCGATGTTTGTTGCAAAAGCTTCTCCCAGGCAGCCACCCTGAAGAGACACCAACGCATTCACACATCGACACAGCCTCGGCGCAAGCGTGGACGCAAGCCGGTGTGTACTTTGGACAATGAGGGAGCGGCTCATCTCTTCTCTTGTCCTCACTGCCCGTCACGGTTCAACACAGAGGATCAGCTTGAACATCACAAACTGCTCCACACCAGCCATCCATTCCCATGCCCTGAATGTGGAGAGGCCTTTAAACGGAGGAGAGACCTGGACctgcactcactcactcaccaaGACAAGCAGCCAGCGACGTGTCTTCACTGTTCATCCCAGTTTGTGAACCAGTCAGTGCTGGAAATCCACATGCAGCGTTGCCCTACCTCAGAAGAGGACAAGAACACTGGTCGTGGACGGGGTCAGGGCCGGGGACGTTGCACTGGACAGGTTGAGTGTGACCTATGCGGCCACCGTTGCATGACCCAGGAGGGCCTCGACCTCCATCGGTTGTCCCACACGGGCCAGACACCTCTCAAATGCCCAGTGAGGCCTTGTCGCCGCCGATTTACCTCCAACAGTACCCTGGAGGAGCACGTGCTGGCCCATTTCCAAGGAACGCTCGGCAAGTCCAAAAGCCGACCCCGCTTCCGCTGTCAGATTTGCCACAAGGAATTTGCCTACAATTCCACCTTCAATGTTCACATGAGGACGCATACTGATGAGAGGCCCTTCGAGTGTGTCACATGTGGCAAACGCTTCCGCCAGCTGCCCCATCTGCAGGACCACGAGCGCATACACAGCGGCCTGCGACCTTTCTGCTGCTGGATTTGCGGCAAGAGTTTCAGCGTGGCCGCCCGGCTCACCGAGCATGCCCGCACCCACAGTGGGGAGAAGCCCTACCCCTGTCACCACTGCCCTGCTGCCTTCCGCTCTCGCTCCAACCTGGATAAACACATCCGGCTACACGGAGACCTGCCTGTGGAGAACGCTGAGCAGGAAGCACATGCAGCTGAGGCTGCCCATGTTCAGAAGGTGCTGGAGGGGGCCAAGGTGCTGTCTTCTCTGGCCAACACGGGGGAGATTGAGTCTGGCTCAGTGCAGACCATCTATGTACTGCAGGGGGCCGAAGGAGGTACTGAGACGGTCATGATCCCGTCGGATCAGTTCAGTGGCATTGACGGCACCTCACAGGTTGTCATCCTGCCCTCCTCTGTTCTGGGAGCTCAGGGCATTACTGTTCCCACAATCACCATGGATGGAAATGAAATCACCATGGTGGAGACCAGCCAGTCACCGCAGCATGCCATTGAGTTCATTGTGGAGGAGACTGTGTAAATGGCAGATTAAAAACTATTGCGGAAAGAGCAACAAAGTAGAGAAAGATTAGTTGAGAATTTcaattgttaaaaagtttgcTAATTGAAGCATATGGAGTTATTacctaattttatttatatagtttgATAGGTTTCGAAGCCAGTTTCAACAAAAGTCCTGTAGTAATACAATTTTACTTTTCTTGAACAGAAAATGTAATAGCATTGTTCAAACAGTGTAAAACTAATAAATCAAAGGTTCATAGACAAGTGAAATTGAATGTACCTTCAATTAGTCTTTCAAACTGACTGAAAAACCGATCGACCCTCAGTTGTTTACAGATGTGTATTTATGGCCCCTATTTATTAGGGGAAGACAAGTGGGGCCCCATTAAATGTCTTCTGTTTTCGTTATAATAAAATGCTTCAGCTTTCACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101229 lncRNA upstream 237647 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA upstream 237647 24520765 ~ 24534169 (+) False dedd1
TU101238 lncRNA upstream 237647 24520765 ~ 24534169 (+) False dedd1
XR_005639731.1 lncRNA upstream 291693 24468835 ~ 24480123 (+) True LOC120562289
TU101425 lncRNA downstream 8685 24800241 ~ 24804853 (+) True G75798
TU101430 lncRNA downstream 31470 24823026 ~ 24824765 (+) True G75803
TU101426 lncRNA downstream 72041 24863597 ~ 24863843 (+) False grik5
TU101431 lncRNA downstream 82448 24874004 ~ 24937218 (+) True G75804
TU101604 lncRNA downstream 324000 25115556 ~ 25115757 (+) True G75941
XM_039806407.1 mRNA upstream 4380 24737531 ~ 24767436 (+) True gsk3ab
XM_039806401.1 mRNA upstream 41828 24689300 ~ 24729988 (+) True cicb
XM_039806402.1 mRNA upstream 41828 24689300 ~ 24729988 (+) False cicb
XM_039806403.1 mRNA upstream 41828 24689300 ~ 24729988 (+) False cicb
XM_039805667.1 mRNA upstream 94519 24621700 ~ 24677297 (+) True erfl3
XM_039806844.1 mRNA downstream 14733 24806289 ~ 24883743 (+) False grik5
XM_039806845.1 mRNA downstream 36369 24827925 ~ 24883743 (+) False grik5
XM_039806846.1 mRNA downstream 63734 24855290 ~ 24885373 (+) True grik5
XM_039806847.1 mRNA downstream 63734 24855290 ~ 24885373 (+) False grik5
XM_039805167.1 mRNA downstream 123927 24915483 ~ 24996309 (+) True LOC120561858
TU101208 other upstream 334997 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 335046 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 717488 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 739371 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 892401 23873916 ~ 23879415 (+) False LOC120563047
TU101448 other downstream 123698 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 700258 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 711044 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1348345 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 2016562 26808118 ~ 26815391 (+) True G76315

Expression Profile