RNA id: XM_039806696.1



Basic Information


Item Value
RNA id XM_039806696.1
length 964
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC120562798
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18310072 ~ 18311498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tacaatAAACCCAGTGTTCTGAGGAAATGTAACACATGTTTAGTGTTTGAGGTGTACCTCTGACGACAGAAGACCTTGAAAAAAAGGAGATAAGAGGACTAAAATACCTGAAACTAAGAGGGTgagggcagacagacagacagatggtgtAGGCATGAAGTTTTTCCTTCTTTTGACTCTCTTTGGAGGGGCAGCTGCAGTTGCCCTGAAGGAAGGTAACAAGATTGTTGGAGGGCATGAGTGTCCGAAGAATTCTGTGCCCCACCAAGTGTCTCTCTTCACTGGGTACAACTTCTGTGGTGGGACTATTCTGTCTGATGAGTGGGTGCTCTCTGCTGCACACTGCCAAACAAAGTCAGATGTAGAAGTTCGACTGGGAGAGCATGACATCTGGGAACCTGAAGGGACTGAACAGCACATTATGTCTGCCAAGTTTATTCGCCACCCTGACTACAACTCCCGCACACAGGACAGTGATATCATGCTGATTAAACTGAGTCGACCTGCAACTCTGAACAGCTACGTGAGCCCTGCTACACTCCCTTCAAAGTGTGCCAGCGATGGGACAATGTGCCAAATCTCTGGATGGGGGAGTCTTCGTCCCAGCAATGAGGGCTCGAGGTACCCTGATAAGTTGCAGTGCCTGGACACCCCTCTCCTGAGTGATGACACATGTTTTAATTCATATCCTTTCCAAATCACTGAAAACATGATCTGCGCTGGCTTtctggagggagggaaggacTCCTGCCAGGGTGACTCTGGGGGTCCTATGATCTGTGACGGAGAACTCCAGGGAGTTGTGTCTTGGGGGCATGGCTGCGCTTTGAGAAAAAAACCTGGGGTGTACACAAAAGTTTGCAATTACATCTCCTGGATCAAGAACACCATGGCATCTGGCTGAGGAGCAAATATATCAAATAATTCACATGTGAACTGGCAGTAAAGTCAACTATATGATGCA

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97894 lncRNA upstream 98649 18202757 ~ 18211423 (+) True G73254
TU97863 lncRNA upstream 179754 18130052 ~ 18130318 (+) True G73233
TU97862 lncRNA upstream 180853 18129019 ~ 18129219 (+) True G73232
TU97861 lncRNA upstream 182185 18127423 ~ 18127887 (+) True G73231
TU97860 lncRNA upstream 182754 18125080 ~ 18127318 (+) False G73230
TU97952 lncRNA downstream 19169 18330667 ~ 18330913 (+) True G73307
TU97956 lncRNA downstream 79841 18391339 ~ 18395195 (+) True G73311
TU97975 lncRNA downstream 112491 18423989 ~ 18424403 (+) True G73326
TU97979 lncRNA downstream 129489 18440987 ~ 18448429 (+) True G73330
TU97980 lncRNA downstream 144076 18455574 ~ 18461325 (+) True LOC120562807
XM_039806700.1 mRNA upstream 137829 18170829 ~ 18172243 (+) True LOC120562800
XM_039806002.1 mRNA upstream 204323 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 204323 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 555017 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 563046 17741886 ~ 17747026 (+) True stmn1b
XM_039805443.1 mRNA downstream 3171 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 75847 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 83909 18395407 ~ 18397717 (+) True si:dkey-79d12.5
XM_039805448.1 mRNA downstream 87563 18399061 ~ 18420721 (+) False kcnn4
XM_039805447.1 mRNA downstream 87564 18399062 ~ 18420721 (+) False kcnn4
TU97779 other upstream 530942 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 662886 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 849745 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 857504 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 941297 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 87558 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 87558 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 103600 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 320904 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 320908 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile