RNA id: XM_039806699.1


Basic Information

Item Value
RNA id XM_039806699.1
length 968
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120562799
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18725052 ~ 18743800 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcTCTGTTCCCAGTGTCACTGAGTAGAACTACTTGCTGTGCAGTTGTTGATGTTATTGAGGTAATATTAAGCCTACTGCATCTTGCCAGCGTGGACACTGCAGTTGTTGTTTACTGTAAGCTGTCTCAACACAGTAGGCCAAGACAGAGCCTGTCTGAGCTACTTGGAATTTCACAATTTTGGTCTGACCCCGAGAGGACGACATGGACTTTCTCAAGTGGCCTCTGTTTTTTGTGTGCCTTTGCTCTAAGGGTTCTGAAACTGAAGGCTCATCTTGGACAATTAAGGTGCCGTCTTCAGTAAAAGGTCTCCCTGGATCCTGTTTGGTGATCCCTTGCTCGTTCAACTACCCAGATCCAGGCAGGGTGGTCACTGAATTCACTGGGATGTGGGCCGAGGGGGAACATGAGCTCATCTATCACCCAGACAAGTTAACAGTGAAGCAGTATCAGAGTCGGACAGAGCTGCTGGGAGACATCAGTCTGAAGAACTGTTCATTTAAGATTGATCCCCTTCGACAAAGTGACCAAGGGCCGTTTTATTTCAGGATCGAAATGGCAGGCTATGAAAAGTTTTCTTACAAAGAGAACAGAGTCTCCATTACAATGAGTGTACCAAATCCCATCCAGTTCTCTGTGAAAGAGGAGGTAGTGGAAGGTGATAAGGTGTCTGCATCCTGCTCAGTGTCTCACTCCTGCCCCACCTCTCCTCCTGTCTTCACCTGGAGTCAcaaaggacacacacatgtCCAACCACAGCAGCTTGACGATGGCCAGTGGAGAGCGACATCTACCATAAACTTTCAAGCTACCAGCGCTGATCACAACAAGCCTTTAAAGTGTACTGTAACATACCATGGAGGGCAGCACCAAACAACATCCAGAGACCTCAAAGTAAAATGTAAGTGTATATGGCAGTGTGGCTTTAAACACTGTAACTTAGTAAGTACGTGATActattattataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98032 lncRNA upstream 32082 18687042 ~ 18692970 (+) True G73361
TU97987 lncRNA upstream 159970 18501151 ~ 18565082 (+) True G73338
XR_005639851.1 lncRNA upstream 229708 18490124 ~ 18495344 (+) True LOC120562823
TU97978 lncRNA upstream 254974 18467701 ~ 18470078 (+) True LOC120562806
TU97980 lncRNA upstream 263727 18455574 ~ 18461325 (+) True LOC120562807
XR_005639852.1 lncRNA downstream 869 18744669 ~ 18745404 (+) False LOC120562824
TU98059 lncRNA downstream 6545 18750345 ~ 18750799 (+) True G73377
TU98218 lncRNA downstream 69509 18813309 ~ 18815597 (+) True G73484
TU98220 lncRNA downstream 82782 18826582 ~ 18828688 (+) False proser3
TU98221 lncRNA downstream 82782 18826582 ~ 18828688 (+) False proser3
XM_039805283.1 mRNA upstream 12084 18700302 ~ 18712968 (+) True LOC120561938
XM_039806723.1 mRNA upstream 69321 18652386 ~ 18655731 (+) True LOC120562819
XM_039805488.1 mRNA upstream 83723 18638209 ~ 18641329 (+) True LOC120562049
XM_039806694.1 mRNA upstream 87745 18632402 ~ 18637307 (+) False LOC120562796
XM_039806713.1 mRNA upstream 176855 18545673 ~ 18548197 (+) True LOC120562811
XM_039805456.1 mRNA downstream 5285 18749085 ~ 18773822 (+) True LOC120562035
XM_039805454.1 mRNA downstream 20960 18764760 ~ 18773822 (+) False LOC120562035
XM_039805457.1 mRNA downstream 20960 18764760 ~ 18773822 (+) False LOC120562035
XM_039805455.1 mRNA downstream 24536 18768336 ~ 18773822 (+) False LOC120562035
XM_039805458.1 mRNA downstream 46825 18790625 ~ 18799451 (+) True si:dkey-238d18.4
TU98024 other upstream 71415 18652411 ~ 18653637 (+) False LOC120562819
XR_005639844.1 other upstream 87745 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other upstream 87745 18632406 ~ 18637307 (+) False LOC120562796
TU98016 other upstream 87745 18635436 ~ 18637307 (+) False LOC120562796
TU97972 other upstream 304725 18415098 ~ 18420327 (+) False kcnn4
TU98057 other downstream 862 18744662 ~ 18746675 (+) True LOC120562824
TU98340 other downstream 404813 19148613 ~ 19158995 (+) False G73570
TU98343 other downstream 404813 19148613 ~ 19158995 (+) True G73570
TU98645 other downstream 903175 19646975 ~ 19649511 (+) True G73779
TU99269 other downstream 2264233 21008033 ~ 21011371 (+) False sec61b

Expression Profile