RNA id: XM_039806700.1


Basic Information

Item Value
RNA id XM_039806700.1
length 918
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC120562800
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18170829 ~ 18172243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATATGTGTCCTTGGTCCATCAGATAGCAGAGGGACAGAGTGGGTTTAAAAGGGGCTGCAGTGCAGCTGAGCTGACACCGAGGCTGAGACCTACAGCATCATGAAGGCTTTCATTCTTCTGGCTCTGTTCGCAGTGGCATATGCCGCTCCCATTGAGGATGACAAGATTGTTGGAGGCTACGAGTGCAGAAAGAACTCTGTGGCCTACCAGGTCTCTCTGAACGCTGGCTACCACTTCTGTGGAGGCTCCCTGATCTCCAGCACCTGGGTGGTGTCTGCTGCTCACTGCTACAAGTCCCGCATCCAGGTGCGTCTCGGTGAGCACAACATTGCTGTCAGTGAGGGCACAGAGCAGTTCATCGACTCTGTCAAAGTCATCCGTCACCCCAGCTACAACAGCAACAACCTGGACAATGACATCATGCTGATCAAGCTGAGCAAGCCCGCCTCCCTGCACAGCTACGTCGGCACCGTGTCCCTGCCCTCCAGCTGTGCCAGCTCTGGCACCCGCTGTCTGATCTCTGGATGGGGCAACACCAGCACCTCTGGGAGCAGCTACCCTGATCGTCTGAGGTGCCTGGATGCCCCCATCCTGAGCGACAGCAGCTGCAGGTCCGCCTACCCTGGACAGATCACCTCCAACATGTTCTGTGCTGGATTCCTCGAGGGAGGCAAGGACTCCTGCCAGGGAGACTCTGGTGGCCCCGTGGTGTGCAACGGTCAGCTGCAGGGTGTGGTGTCCTGGGGTTATGGCTGCGCCCAGAGGAACAAGCCCGGAGTCTACACCAAGGTCTGCAACTACAACACCTGGATTCGCAACACCATGTCCTCCAACTAAAGTCACTTGACTGGAAGGAACATTAAACAGTCTCTTACTATGGTATCTGCTTTGAGAAAATAAACATCAACCTCACTTTC

Function

GO: NA

KEGG:

id description
K01312 PRSS1_2_3; trypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97863 lncRNA upstream 40511 18130052 ~ 18130318 (+) True G73233
TU97862 lncRNA upstream 41610 18129019 ~ 18129219 (+) True G73232
TU97861 lncRNA upstream 42942 18127423 ~ 18127887 (+) True G73231
TU97857 lncRNA upstream 43511 18124994 ~ 18127318 (+) True G73230
TU97860 lncRNA upstream 43511 18125080 ~ 18127318 (+) False G73230
TU97894 lncRNA downstream 30514 18202757 ~ 18211423 (+) True G73254
TU97952 lncRNA downstream 158424 18330667 ~ 18330913 (+) True G73307
TU97956 lncRNA downstream 219096 18391339 ~ 18395195 (+) True G73311
TU97975 lncRNA downstream 251746 18423989 ~ 18424403 (+) True G73326
TU97979 lncRNA downstream 268744 18440987 ~ 18448429 (+) True G73330
XM_039806002.1 mRNA upstream 65080 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 65080 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 415774 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 423803 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 429449 17739832 ~ 17741380 (+) True LOC120561605
XM_039806696.1 mRNA downstream 137829 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 142426 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 215102 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 223164 18395407 ~ 18397717 (+) True si:dkey-79d12.5
XM_039805448.1 mRNA downstream 226818 18399061 ~ 18420721 (+) False kcnn4
TU97779 other upstream 391699 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 523643 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 710502 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 718261 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 802054 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 226813 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 226813 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 242855 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 460159 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 460163 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile