RNA id: XM_039806718.1


Basic Information

Item Value
RNA id XM_039806718.1
length 1791
RNA type mRNA
GC content 0.41
exon number 2
gene id si:dkey-79d12.5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18395407 ~ 18397717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGAGTTCAAATAATGTGCTCCCTTCTTCACAGGTCTGCAGAGAATGGTAGGCCCTTCACAATAGCCTGTTTTGAAGAGGAAGGTGTGGACGGAAAACAGACTGACTCCTCAGTGGACTCAATAAATCTGGACACGTCAGATTACCACTCTGCTACCTCTTCGGACTGTGGTTCCACAGCGTCGAGCGACACAGAGGAGGAGGCAAAGGATGGCGAGACGGAGGGAGAGCGCGGAAATGAAGAGAAGGAGGTCGTCAAGAAGGAAGAGGCAGAAGGCGACACCTACACGGTAGCAATGATGCCCAGGATTCGCAAGCGACACGGAGAAGGcccaaataaagtaaaatacgTCAGAAATATGCTCCCTGCCAGCCTCCAGTACTTCTACCACCCTGCACCAGTTTGGCCTCAGTACAAGAAGGGCGCTCCTATGTTTCTTAACCCAGTATGCGCACCTCCGCCAACTCCACCCCAGCAGGTATTTGGCTACTATATCTTGCCGCAGCCGTCTCCGCAGTTTATTCTGCCTCAGGCCACTCTGCAGCCGTGGGGAGCTGTGAAGGGTTAGACCGTCCAGGATGTGTGGGGTGAAGGTGGATAGAGCGTTATAAGCTCGTTCAACTGAGCCATGTCGTGTCAGTTCTCGGAGTTCAGCTAAACTTGGGCCAAAAAAAGAACTTTGTTTAACTGTATAGCTCAAAGTTATTCCTTTTACAGCCTGTAATGattcctttttccttttcatttctGGTGACTTGTAATTGATGGCTTATACTTGGCACAGAGATGCCACTGAACTTGAATGaaaactgttttcttttttaaaatctaTCAGGTCTAAactaaaaattttttttacgtATTGTACACGTTAAGAATGACTTCAATCATTGGGTGCTTGGACTAACTCAGGAACTCTCAGCAATATCCTAATAgcaaataatagtttttttcaGGTGTTACTTCTGTTATAATGTCAATTTCTTCACCAAACAATTTCCAGTATTTAGGTCTCAATTAATTAATGCACAATGTGATTCAGGGGTTTATTCTACTGTAGCTAGGGTgacaatatatgtatattaagAGGAATATTTTTACTAAACTGCTTGTAAATAATACAGAACTTGAATAGACTgcacactttctttttttttttgttgtaatttatttGGCCACCAGTGGATGGCACATGgaattgtatatttttgtataaACAGTGGCTGCTGTATTTTGCAAATCTAACTTCACCCAACACAAACATGATTTTCAATagattattacattacatgtcatttagctgacgcttttatccaaagcaacttacaattgctatacatcagaggttgcacgcctctggagcaactatgggttaagtgtcttgctcagggacacattggttgatgtatcgcagtgggaatcaaacctggatctcccacaccaaaagcatgtgtcatatccactgcgccatcaccacccactaGCTTAAACTATGTGCTGTCAGTACAATGTACCTGCTGAGGTGTAGCTGTATTATGGCCTGCTCAAAGctctgtgtttttaaagtttttattgTAGATACCTTTCCTTTCCATGAAAATCTGCTAAATCCTGAATACACGTTTCACTCACTGATTGTTATGTActgtgattattttttattatattgatGCATATTTATTTGCAACCTTGAAGCTCATCTGTATGCTTAAGCATTGTTTTGCTTTCACCTTTTGCATTAGCCATTTACCTTCTTATTGCAGCAGATTAAATCAACTCATACCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97956 lncRNA upstream 212 18391339 ~ 18395195 (+) True G73311
TU97952 lncRNA upstream 64494 18330667 ~ 18330913 (+) True G73307
TU97894 lncRNA upstream 183984 18202757 ~ 18211423 (+) True G73254
TU97863 lncRNA upstream 265089 18130052 ~ 18130318 (+) True G73233
TU97862 lncRNA upstream 266188 18129019 ~ 18129219 (+) True G73232
TU97975 lncRNA downstream 26272 18423989 ~ 18424403 (+) True G73326
TU97979 lncRNA downstream 43270 18440987 ~ 18448429 (+) True G73330
TU97980 lncRNA downstream 57857 18455574 ~ 18461325 (+) True LOC120562807
TU97978 lncRNA downstream 69984 18467701 ~ 18470078 (+) True LOC120562806
XR_005639851.1 lncRNA downstream 92407 18490124 ~ 18495344 (+) True LOC120562823
XM_039806719.1 mRNA upstream 6948 18387345 ~ 18388459 (+) True LOC120562815
XM_039805443.1 mRNA upstream 76741 18314669 ~ 18318666 (+) True has1
XM_039806696.1 mRNA upstream 83909 18310072 ~ 18311498 (+) True LOC120562798
XM_039806700.1 mRNA upstream 223164 18170829 ~ 18172243 (+) True LOC120562800
XM_039806002.1 mRNA upstream 289658 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039805448.1 mRNA downstream 1344 18399061 ~ 18420721 (+) False kcnn4
XM_039805447.1 mRNA downstream 1345 18399062 ~ 18420721 (+) False kcnn4
XM_039805449.1 mRNA downstream 1923 18399640 ~ 18420721 (+) False kcnn4
XM_039805452.1 mRNA downstream 27472 18425189 ~ 18436249 (+) False smg9
XM_039805451.1 mRNA downstream 27473 18425190 ~ 18435051 (+) True smg9
TU97779 other upstream 616277 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 748221 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 935080 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 942839 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 1026632 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 1339 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 1339 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 17381 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 234685 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 234689 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile