RNA id: XM_039806719.1


Basic Information

Item Value
RNA id XM_039806719.1
length 1033
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120562815
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18387345 ~ 18388459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTATAAACATGGATGCCTACTTGGCAGTAACATGCCACTATGTCACTGCAGAGGCCAAGCTTTCCACTTTGCTTTTAGGAGTGAGGAAGTTCACTGACACGCACACAGCAGCTAACATCGCTGAAGCAAAGTCAGCCCTTATGACAGACTGGGGAATTACAGGGAAGGTAACAAGCTTGGTGACCGACTGTGCGTCAAACATGATTGCATGTGCTATTCAGTTACATCTCCGCCATGTCCCCTGTTCTGACATGTTTTGGCATTGTCGCAAAAATGACTGCTCTCAGTGTGGCAACACTTGTGGACCCCAGGTAAAGAACTCAATGATAAATTTGGCATTGTCGCAAAAATGACTACTCTCAGTGTGGAAATTCTTTTGGACCCCCAGGTACAAGGAGATGGGGTTCTGCAGTGCAAACTCGTCTCAGGCTGCAGTGGAGAGACTCACCAGGGAATGTGCAAAcatcattccaccaccaccaccatcaccaccaccaccaccatcctcACAGGAGTCTTCAGAGCAGGAGGATAATCTCTGGGGCCTGCTTGACAGCCACGTTGGCACACAACGTGTTTCCAACGCAACAGCCAGTGCCATTGCCGAGGTCCAGAGGTATTTGAAAGACCCACATTTGCCTAGGTCAGAGGACCCTCTTAAATACTGGGAAAGGCACCACCTTGTCTTTCCACATGTCTCTCAAATAGCCATGCGCTATCTGTGCACTCCAGCATCCTCAGTGCCATGTGTGACGGTCTTCTCCAAGGCTGGGGAAGTAGTCAGCAGCCGACGAAACCGCCTCAAACCCAGCACCGTagaacacattttgtttctcaATAAAAATCTGGAAAGGAAAACAAGTACAAAATAAGCATTCCCCAAACTGTCATTCACAATCCCCGTTACTGCACAAGTACCTTCCCCAAACCTCCTTTGTACACAAGCACTTACACACAAACGACCTCTTGTATTTCACATAGACCTGTATCACAAGCACTTTCCACAAACCCCTTTATGCTTTCTGAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97952 lncRNA upstream 56432 18330667 ~ 18330913 (+) True G73307
TU97894 lncRNA upstream 175922 18202757 ~ 18211423 (+) True G73254
TU97863 lncRNA upstream 257027 18130052 ~ 18130318 (+) True G73233
TU97862 lncRNA upstream 258126 18129019 ~ 18129219 (+) True G73232
TU97861 lncRNA upstream 259458 18127423 ~ 18127887 (+) True G73231
TU97956 lncRNA downstream 2880 18391339 ~ 18395195 (+) True G73311
TU97975 lncRNA downstream 35530 18423989 ~ 18424403 (+) True G73326
TU97979 lncRNA downstream 52528 18440987 ~ 18448429 (+) True G73330
TU97980 lncRNA downstream 67115 18455574 ~ 18461325 (+) True LOC120562807
TU97978 lncRNA downstream 79242 18467701 ~ 18470078 (+) True LOC120562806
XM_039805443.1 mRNA upstream 68679 18314669 ~ 18318666 (+) True has1
XM_039806696.1 mRNA upstream 75847 18310072 ~ 18311498 (+) True LOC120562798
XM_039806700.1 mRNA upstream 215102 18170829 ~ 18172243 (+) True LOC120562800
XM_039806002.1 mRNA upstream 281596 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 281596 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039806718.1 mRNA downstream 6948 18395407 ~ 18397717 (+) True si:dkey-79d12.5
XM_039805448.1 mRNA downstream 10602 18399061 ~ 18420721 (+) False kcnn4
XM_039805447.1 mRNA downstream 10603 18399062 ~ 18420721 (+) False kcnn4
XM_039805449.1 mRNA downstream 11181 18399640 ~ 18420721 (+) False kcnn4
XM_039805452.1 mRNA downstream 36730 18425189 ~ 18436249 (+) False smg9
TU97779 other upstream 608215 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 740159 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 927018 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 934777 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 1018570 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 10597 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 10597 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 26639 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 243943 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 243947 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile