RNA id: XM_039806737.1


Basic Information

Item Value
RNA id XM_039806737.1
length 3343
RNA type mRNA
GC content 0.47
exon number 16
gene id wdtc1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17475568 ~ 17484853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACATGCGTATGCTCAGTGGGAGGAGGATTGTGTTCATGTCAGAGAAGGTATTAGCGAGAATCCTGTCAACAAACTCACAAAGAGTGTGATTTCTCACGTTTATTAAATGGACATTTCTTGACAGAAGCCTTTTTAGTTCAAGGAAACCGGTGAGATTTCTTAAGCAGTCCTGTATTACAATTAAAGCGTTGCAAatattaacgttaacgttacctgaagTGGACGTTTTGTTTAGCTAGCAAGCTTATTATCGAGGGAAACAGCGTAAATGTCATCTGAGCGCTGACTCCTGGAACCTCCAGCCCAGACCCTAATTTATGTTTCGTGGTGAGGCCATGACTTCTGTCAACATCACCAGAGACATCCTGCACCGGCAGATCAGAGACAAGAGAGCATCAGGCTTCCAAAGGGTCTATCATGTGACTGACCCTTTCATCAAAAGACTTGGACTGGAGGCTGAGCTTCAGGGCCATACTGGCTGTGTGAACTGTTTGGAATGGAATGAACGAGGAGATTTACTGGCCTCTGGCTCAGATGATCAACATGCCATCATCTGGGATCCATTCAAACACAAGAAGCTTACAACTATGCACACAGGTCATGCAGCAAATATATTCTCTGTAAAGTTCCTCCCTCACTCCGGGGACAGAATTTTGATAACGGGTGCAGCCGACACAAAGGTCCATGTGCATGACCTGACGGTGAAGGAAACCATCCATATGTTTTCTGATCATACCAACAGAGTCAAACGCATCGCCACAGCACCCATGTGGCCCAACACCTTCTGGAGTGCTGCGGAGGATGGCATCATCAGACAGTATGACTTGAGGGAGAGCAGTAAGCGCTCCGAGGTGCTTATTGACCTGACGGAGTTCTGTGGTCAGCTGGTTGAGGCCAAGTGTCTAGCTGTCAACCCACGGGACAACAACTACATGGCAGTGGGAGCCAATGGGCCTTTTGTTCGCCTCTATGACATCAGGATGATTAACAACTACAGGAAATCTATGACTCAGAGCACATCAGCAGCTGTGCACACATTCTGTGAAAGACAGAAGCCCATCCCAGACGGAGCTGGGCAGTATTATGTTGCAGGGCACCTGCCAGTGAAACTCCCAGACTACAATAATCGCCTGAGGGTTCTGGTGGCCACCTATGTCACCTTCAGTCCTGATGGCACTGAACTACTAGTTAACATGGGTGGTGAACAGGTGTATCTGTTTGACTTGACATTTAAACAGAGGCCGTACACCTTCTTGCTGCCAAAAAAGTGCCAGTCAGCAACAGGAGATGTACAGAACGGAAAGACAACCAATGGCGTCTCCAATGGAATTCTCTTGCCGACCAGCCATATTCGATTTGCTGGAAGCAAGATGCGCTCTAGTTCTTCTGAGCTCCCTGCTCACTTGGAGATGTTAAAGCAACAAGCTAATGATGCATTTGCACGTCAGCAGTGGACGCAGGCCATTCAGCTGTACAGTTTAGGCATTCATCATGCCAGCTGCAACGCCATGCTGTATGGGAACCGGGCAGCAGCATACATGAAGCGCAAGTGGGATGGAGACCATTATGATGCTCTCAGGGACTGCCTGAAGGCTCTGACTCTAAACCCTGGTCATCTGAAGGCTCATTTTAGGCTGGCACGGTGTCTGTTTGAGCTGAAGTATGTGTCCGAAGCTCTGGAGTGTCTTGATGATTTCAAAGGAAAGTTTCCAGAGCAGGCGCACAGTAGTGCCTGCGATTCCTTGGATAAAGATATCAAGGCTGCACTCTTCACCAAGACCGAAACAGCAGAAGATAAGAAGGCCAACAGCTCCATTCGATTCCACTCATTCAGTCGGAAGGAGTCCATCCCTGAAGATGAGTTGGTGCTGAGAGAGCGCAGCTTTGACTACAAGCACAGATACTGTGGTCACTGCAACACCACCACTGATATCAAAGAGGCCAACTTCTTTGGGAGCAAAGGCCAATACATTGTCAGCGGCTCAGATGACGGCTCCTTCTTTATCTGGGAAAAGGAGACCACTAATCTGGTGAGGATCCTGCAGGGGGATGAGTCCATAGTCAACTGCCTGCAGCCACACCCCAGCTACTGCTTCTTGGCTACGAGTGGTATTGACCCAGTGGTTCGATTATGGAACCCCAGACCAGAGACAGAGACTGAGAACGGGCGAGTGGTGGAGGACATGGAGAGTGCTGCTCAGGCGAACCAGCGGCGTATGAACGCTGATCCGCTGGAGGTAATGCTGCTCAACATGGGCTATCGCATCACAGGCCTGCGTGGCGTCGGCCTGCATGGCGTCGGCCCGGATGGCTCAGATGACGAAGACAGCTCAGAGGGACAAGTACAGTGTCGGCCAAGCTAAACAAACTGTCAGCCATTCTAGAGAATGGATGTAGGAAGCAAAGCACTCTCCCAGCTCCTGTTTGAATTTTaattccccctctcccccctaaTCTGACAGAAACATTGAGTGAATGTCTTGTCACATCTCTGCACTATGCATCGCCCTCCCCCGTCCAAAGAGAGGACTGGTGGAGACCACTTTGGGGAGAGGAATTCACGGAGGGTGGAGAAGACACCCACCTCGCCCCCTTCAAAGCACCAACCTCAGCCTCTCCCTCCACCCAGTGGTGACAGGGGGACATCTTTTGAGGAGAGCACCTTCCACATCACTCCCAAGTTTCTCACGAAGGAGGAGGAGTTCAGCACTTATCCTTCCTCAGGTTTATGTtggagagacacacaacacgtAGAAGGAGAAGCCTGCGCTCTGATGACCTATTTTCAGGTCAGTCAGGTCACACAGTCGCAGTGACTTCCATGGAGGATCGGATCACAGACAAGAAGACGGTGCTTTGTTGCATCTCCTGTCTGCTCTACAGTTGGAGCTAAGAGTCTTAGTGCCCGCTCATCTCAGAAAGGCTGCACACCCAAGTCATTCATTCTGAGTTAGACTTGGTCATATTTTCAGTTGGGGTTTTGATCACAGGAAGCCTAGAATTAATTGTCACTCTCCAAGTTGTGAAAGTTGTACTGTTGCTCcaatgaaatgtatttataagcttttttttttttagtttataactgtcagaaaataaaaaaacaagtggTTTCTTCTGCCAAAGGTTGTCATTTCAATGGCCTAGGATTAAtgtctgttttctttatttcattGAAACATAATTTTGGCATACTGTTCTCAATTTAGTTAAGAGGTTTTACTACAATAGATTGTTGACAAGATCAACAACATATTAGAGAAACATttgtgttaaaaagaaaaagaaaaatgtaatttaatcttTGGATATAAATTAAATCCCATTGAATGCAAATGTCA

Function

GO: NA

KEGG:

id description
K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97564 lncRNA upstream 12557 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 71957 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 409673 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 483595 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 512744 16959788 ~ 16962840 (+) True G72859
XR_005639682.1 lncRNA downstream 15736 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 439097 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 629862 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 640141 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 640141 18124994 ~ 18126954 (+) False G73230
XM_039805013.1 mRNA upstream 14466 17456645 ~ 17461118 (+) True ubxn11
XM_039805492.1 mRNA downstream 1313 17486166 ~ 17489474 (+) True LOC120562051
XM_039805489.1 mRNA downstream 4743 17489596 ~ 17491547 (+) True LOC120562050
XM_039805491.1 mRNA downstream 5222 17490075 ~ 17491941 (+) False LOC120562050
XM_039805493.1 mRNA downstream 7591 17492444 ~ 17497733 (+) True kdf1a
XM_039805494.1 mRNA downstream 7591 17492444 ~ 17497733 (+) False kdf1a
XR_005639656.1 other upstream 15257 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 23016 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 106809 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1403383 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1919632 15553464 ~ 15555952 (+) False irx4a
TU97725 other downstream 160660 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 266103 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 914203 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 914203 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 930245 18415098 ~ 18420327 (+) False kcnn4

Expression Profile