RNA id: XM_039806745.1


Basic Information

Item Value
RNA id XM_039806745.1
length 4772
RNA type mRNA
GC content 0.48
exon number 40
gene id ulk4
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12998150 ~ 13100469 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTGCCTGACCAAAGAGGTTCCTTTCATTCGGTCTTCCACgatgaaaaagtgaataaacttCTTCGTTGGGAGAACGGACTCCAGACTTCCCTATTCCAGTTGGAATTACATGGCCCATCACGCTTCCGCCATCAAACAGCGGGTTGTTGAAGCAAGAGTAGATGGAGAACTTCATCCTGTATGAAGAACTTGGAGCAGGCAGTAGCTCTGTTGTCTACAAAGGAAGAAGGAAAGGCAATCTCAACTATGTAGCTATCATCTGCGCCGACAAAGCCAAGAGACCTGCGATCACTAACcatGTACGTCTCAGTCAAGATCTGGATCATCCCAACATAGTATGCTTCTACGAATGGTATGAAACAAGTAACCACCTCTGGTTGGTAGTTGAGCTCTGTACAGGTGGTTCCCTGGAGTCTGTAATTGGTCATGATGGATGTCTGTCAGAAGATGTGGTGAGGAGATTTGGATGGGACTTGGTCAAAGGACTGAAACATATCCATGAATTGGGAATCATTTTCTCTGACTTGACCCCTGCTAAGATCCTACTGGATGGTAGTGGCACTCTGAAGTTTGGTAACTTCTGTCTGTCCAAGGCAGACGGAGAGACACTGGAGGATTTATTTACCTTGCTCTCTACATCTGAGGAGGCAGGGGAAGGAGATACCAAGGACAACTTTGACAATACGAGGAAAAGATTACATGGTCCTCCAACTTATAAAGCTCCAGAGGTTTTGCAGGGATCGCAAACCAATATGATCTCTGATTTCTGGGCTTTGGGTTGTACGCTCTACTACATGTATACCgGTACACCTCCATTCTATTCTGATAGCTCCACAGAAATGACAGAGATGATTTTACATCAGGAACCACCCACtcccagacagacagTGTTTTCAGCCAGTCCTCCCAGTGAGGACTTCCAGAATCTTCTGAAAGGCTTGCTCAACAAAAACCCAGATAAGAGGATGGACTGGCCAGAGTTGTTGGATCACCCTTTCTGGAAACAAGTACtaatggaggaagaggaggaggatgaagaacGGGATCTGGAGGAAAAAATGAGCTGTGAGGGGGTTGGTTCAGCAAGCTTGAGACAAACAAGGATCCCTGACCCTGACCCTCCAGGAAAGGCAGACAAGCTTCCCAACAGCCATTCGGCCATCACCCAGCCAGCCCATACGATTTCTAAGACACTAATATCATCACAGACAACAGCTGCAACAACTTATAGACCATCTGACAGAAGGATTGATTGCCAACAAGCTGTCAGACACACAACCTGTGGAGCCTTAGTGAACAGCCAGGGGTTGGATAGAAAGATgggaaaggagagaggagaggaggaggcaaAGACAGAACATGAATCCAAGCTAACTGGGGCCCAGATGTTTCACACACTGCAGCCCAATAAGTCATTCATACTAGATAACGTATCAGAGCTCAGGCCAAAGAGTGGTATGGATGAGGACAACACTGAAGCCATTTTTCTGCTCAGcTCCTGTGCCAACTCAAGGAGAAGCTGCAGTATCTCAGACTCTCCGAACCTGATCCCTACGCCTCAGACCAGTACTGATACAGACATCATATCCTGTGTGAAAGCTCTTCTTCATACTGACTTTGATCTGACTGTCACCCCAATCATGGACAACCCCAAGATTCTTAAGAGTCCTCCTGTGCGATTTGATCCCAAGACCCTTTGTGTACCGTCCTATTCAGttcAGAAGCTGCAGTCCCTGAGCGATGAAGAATGGACTTTCTTCCTGTTACAGCTTTGTTCATCCCTTGAAGAACAGAACCCCTCTGCTGCTCCTTCTCCTCACTCCACAGCCACTCGCTCCAGACTTAACCTGCTGTGCTACCTCTGCTGTGTGGTTGGCCACAAAGTCATTGCTAACAGGCTGATGAACTCAACACTGcttccAGTGTTGACCCAGCAATTACGACAAGCTCCTAACTGGGATGTACGGAGCAAGGTTCTTAGAGTGATGGGTCTGCTGGCTCTGCACTGTACTGAACTGGGAGAGGACAGTCTTGTTTCTGAGGCTGTGTCCACATTGATAGACCTGTTGAGAGATAACCTGAAGAATAGCAAAATAAAGCAGTTCCTGCTGCCACCACTCGGGGAGATCCTCTACCTCATCGCCTCTCAGgaggagaagagaggctCCCCAGAGGGACTGTGGTTCGTTCCCGCTGCCGCCTACACTGGCTTAATGAGGAGCCTGCGGGAAGGGgATGATTCCGTAGTTCATCACATGGCTGCAAAAGCCATAGAGAACATCTCCACCACTGTCTCTGCCCCCTCCCACCACCTGGTTACCACAGAGATAGGCTCTGCCCTGTGGTACCTGTTCACTCACTCCACAGTGGAGGCTGTCAGAGTCACTGCCATCTCCGCTCTTTCAAGGCTAACCCGGGTGGCCCCAGCAGTCTTCTTGGCAGTGATTGACACCTGTGGCCCTGTGGCCATCTTGGAGGGCGTGGGTGGAGCAGGGGCAAGGGTCCAGCAGCACCTCCTCACTGCTATGGCCACTGCCCTACTCACCTCACGCATCCAAACACACCGCGTCACACAGAGCAAGGATTTGGTCTTGAAGGTGCTGCGCTGTCTAGAGAGTCCATCTACAGTAACAAGAGGCAAagcattactactactactgctactaatacaggacaacacacacactctgctatACTGCTGTCAACACAGACTTGTGATGCACCTGGAGAGAGACCTGCGCAAAGCCACTCCCCTCAGAGAGAACCCCAGCCAATCAGGATATCTGTCTCAGTGTCTGGATTTACTGATTGTATATCTGAGTAGCACTGCACCACTGATACTGgaGGATGTCTTATGTGCATTACAAAGTGTGGTCGGGAGAAGACACCCATCTACAGCTCAGTGCAGACAGCTTAAACACACTTTGCCTACAATATCTGTAGTGCTGGAACTTCTTTCATCCCAGGTCTTTAGATGTCAAATTGTAACTGAAGAACTTCTAGCTCAAATTGGATTGCTACTGAACTATATCACCTCTATAGAGTCCAATGAAACAAATCTGGCCAGCGCTTTGGGTGCAGCAGTATGTGAGGAGTTGATTAGGACATCTCTGTCCATTGTGGAAGTCCTAAGTCAGCACCATACTCTCATCACTCCACATCGTAGTGCTGTTGTGGATGCCATCCTGCCCCCTCTGACAACACTGGCTTTCAGCAGAAGTGTGGAGTGGTCTGTGTTTGTTCTGAGGGTGCTGTCCGAACTCAGTTTTGTCCTGCTGGTCCAGGAGAGTGATGGAActgaggaagatgaggagacagaggaaaataaagaaagaagagaggaaggagaaaggACAGCAGAAGGAAGAGATGATGGAAGCTCCTATAATCAGATCTTAGCTCTCCTCACTAAATCTCTGCTTCCAAGGTATGAGTCTCTTCTTCGAGCAGCAGAGCCTATCCCACTCTATGCACTCAAACTGCTGGTATCGATGACTGAACACAGCGTGCAGATCTGCAggtTGATCAAACATAGTAAGATCCTACCAATGGTCTTTCAACTCATTATGGCCGACAGTAGTAATGTTACCAGTGGGATGGTCCAAAATGTTATCGCCTTGCTGTGTAATCTTAGTGGAGACACAGTCTTGGACCTGGAGCCACTATACCAACaagGCCTAATAGAGGTGGTGGTAAGCACCCTCTCAGAGGCTGCTCTAGTCCACCTGGATGGAGAGGGGCATGCTGGGAGGAAGATCAGCCATCTTGTGTTACAAGCCCTTCTGGAACTGCTTCACAACATCCTAAAACAAACATCTGTTGTTGTCCGCTCAGCACTGCAGagccaGAGGCTATCTTGTCCAGCAGTGGAGATGgaggcagcagagaagctgcTCCTAGAAAACAGACCCCTGAGCCAACTCAGCACACACCTCATTCACATGCTGTCCACTGAAAACCAGGAGGTTTGGGAGGAGTCTATTCAGTGTCTGTCCCTACTGGTCCAGCTGTATGGAGGAGAGGGTTATGACTgtctgtcaccttcctgttTGCAAAGCTTTTCACATGTGctgcgcacacacatgcacaccgaGATCCCCCGAAGCCAACGCACAACACTTAGGATCATCAAACGACTGCAAATTTGTCCTCTTGTGAAAAGTCCTCTCATTACCCCCTGTGCTAACATCAGGGTTCAGACTACAGAGCAATCTGATTGGATAAAATGTCCTGAAGGGGCGGAGCTAATTAGTCTACTGAAGGACATAACTACATCCAACAGaaaaaaacaactcaccATGAGTGGCTACTTGATGGGGAATAAAGCGCTGTGCACACCACAGCAAGCAGCTGTTTTGACAGTTAGTGTTCTAAACATGAGGCCGCTATCAATGGTTGAAGATGATGGCTTCAGAGCATTGATCAATGCCCTCTACCCTGGTTACACTCTTCCTTCAAGGACCCATTTTACTACGCTGATGGAGAGGAAATATCAAGAGACCTTCCAGGTGTCCTGTCGATGTGGTTCCACTGGCTGTTGAAATCCTCCAGGTGATCTCTGGATCCTAAAAGCTTAAAATCATCAAACCTGAGGGCAAACCAGAATCATCCAATATGTAACCATTTCAGAACTTTAAAGATACTTATGATTGGTAGTCTGCTTTTTAGaatgtctttctttcttcaggTAACCTTTTTATGCATAATCAGCTAGAGTATTgttcttttaaaatgttgtcagttttggaataaaatgtCTTTCAACGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96413 lncRNA upstream 52186 12896310 ~ 12945988 (+) True LOC120562936
XR_005639883.1 lncRNA upstream 52613 12896427 ~ 12945561 (+) False LOC120562936
TU96363 lncRNA upstream 114405 12826651 ~ 12883769 (+) True G72134
TU96443 lncRNA downstream 11746 13112215 ~ 13120101 (+) False G72198
TU96444 lncRNA downstream 11746 13112215 ~ 13120101 (+) True G72198
TU96447 lncRNA downstream 19168 13119637 ~ 13124527 (+) True G72199
TU96453 lncRNA downstream 24465 13124934 ~ 13125539 (+) False G72204
TU96504 lncRNA downstream 108359 13208828 ~ 13209034 (+) True G72242
XM_039806881.1 mRNA upstream 116771 12851758 ~ 12881403 (+) True mroh1
XM_039806879.1 mRNA upstream 116771 12852745 ~ 12881403 (+) False mroh1
XM_039806880.1 mRNA upstream 117334 12851758 ~ 12880840 (+) False mroh1
XM_039805269.1 mRNA upstream 149714 12842761 ~ 12848460 (+) True ncam3
XM_039806504.1 mRNA upstream 179040 12813399 ~ 12819134 (+) False LOC120562667
XM_039804903.1 mRNA downstream 111110 13211579 ~ 13215355 (+) False cmtm8b
XM_039804904.1 mRNA downstream 111114 13211583 ~ 13215355 (+) True cmtm8b
XM_039804685.1 mRNA downstream 138645 13239114 ~ 13243225 (+) False LOC120561555
XM_039804684.1 mRNA downstream 138770 13239239 ~ 13243225 (+) False LOC120561555
XM_039804686.1 mRNA downstream 139998 13240467 ~ 13243225 (+) True LOC120561555
TU96328 other upstream 224735 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1288665 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1381932 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1381932 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 2176674 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 24465 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 367758 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1033142 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1075380 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1325325 14425794 ~ 14426180 (+) True G72506

Expression Profile