RNA id: XR_005639856.1


Basic Information

Item Value
RNA id XR_005639856.1
length 5249
RNA type transcript
GC content 0.51
exon number 11
gene id rprd2b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22469978 ~ 22489944 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATAGTTACACGCTTACATtacatatatactgtacctCTATTCTATTTATTCTAAACAGTctctgattaaaataaaaacatggggGCGTGTTTCTAGTCCTCGCTCCTTCATGCGCATCAGTAACGAGCGATCAGCAGACAGAGCTGGAAAGATGGCGGCCGGTTCAGGGGCTGCAAGCGGGCACGGTGCCCGCAGCTCCAACGCTGGTCTGGAAGCGTCTTTGGACCGACGGTTTCAAGGAGTATCCAACACTATGGAGTCAATACAGGGACTTTCAAACTGGTgcattgaaaacaaaaagcacCACGGCCTTATCGTTCGTCACTGGATGAAGTGGCTCAAGAAATCGGACAACAATCACCGCTTGAATCTCTTCTACCTTGCCAACGATGTGATACAGAACTGCAAAAGAAAGAACGCCATTGTGTTTCGTTCAGCCTTTGCAGAAGTCCTTCCTAATGCTGCTCAGTTCATCAGAGATGTGAAGGTCCGCAAGTCAGTGGAAAGGATTTTTACAATTTGGGAGGAGAGGAGCGTGTATCCTGAGGAGGTGATTGCCCAGTTCAAAGCTGGCATgaacaaaaaggaaaaggagCGAGAAAAGCAGAAGCAGAAGGAAAAggagaaggaaaaagagaaggagaaggcgaaagacaaggaaaaagaaaaggagactcCACCAGCAACCGCCTCAGCCAACACCAAAGCTGCCCTGAAGTCCAAGATTGTAGCGGAGTTCACACCCTACTCCCTCATTGAGCAGTTGTCGAGATATAAGCGAGCGGTCGCAGAAGAGGAGTTGAGGGAGAAGCAGCTGGCAGCTCTTAGGGTGGATGTCTGCAGCACGGAGGCTCTTAAGAGACTAAAAGACAAGGCAGGTGGGAACAAGTTTGCGAAGGACTTTGAGGATGGCAGTCTGAAGCTGCAGGAGTTTGTCAGCTTCATGGAGAAGGAATTGAAAACAGGGCCTCCTCTGCTGGAAGCTTTGGGAAACGCAGACATTTTCTATGAGATGCAGTACAAGGAGGTTAAGATTGTGGCGAATGCATACAATGCCTTTGCCAACCGTGTGGGCAGTCTTAAAAGGAAATTGGATTCCCTCAAGTCAACTCTACCCGGACCTGAGGACTCTCCCATCCCCTCACCCTCTGAAGATGCCCCCTCTCCCACTGGCTCTGACTCCCCCTTCCTGGGACTGGGGGCTAGCAGGGCCCAGGTGGATCCAGAGCTTGATGGCAAGGCCATGGATGATGGAGAAATACCCAGTGACAACAGAGATATGGAGGACATGGACTTGTCTGATgaagaggctggtgctgccgcAGCAGGGGCAGATGACAAGAAGGACAAGGCGTCCGCTGCCGTTGCCAAGTCAGATGCGGCATCAAAGCCTCCCACCACACCTACGAAAGTGTCTAAGATCAACACTCCTGCTGCTGCCCCAGCGGCCCCAGTGACTCccaccgctgctgctgctcagagTGCCCCAACAACCCCGATGGGAGTCAATCTGGAGAAGGTGGACCTGGGAAAGATCAGCTCCATTCTCAGCTCACTCACATCTGCCATGAAAAATACAGCAGCTAGCCCATCACCTCGGCCGTCTCCAGGAACACCCACCACTCCCTCTTGCCAATCAGCAGCCTCCAAAACGACCTCTTCGAGCCCTCACCTGGCCAGCATCCTGTCACGCGTTGACATCACACCTGAAGGCATACTCAATGCTCTGTCTAAAACGAACACACCTgGTTTGTCCTCTCTCCTGCAAAGTGTGACAAACAGCACCTCTGCTCCTTCCACTCGAACCTCTCCAGAATCATCAGGAGTTAAAAGCCTGCTCACCCCAACCACCCCAAAAACAAAACCCACTCTGGGGAACAGCCTCAAGCGAGACACACCTGGGAGAACCAGAGATtgggagaaggagagacagctgtcccctcctcctccaccccctCCTCGTCCCTCagcttcttctgtctctcccccgAGCCTAGAATCAAAAATCAACAGTTTCCTGCAGGGTAATCCAGGTTTTAGTCTCGCTCTGGGTGAGGTCAGTCCCGATGGGGTGGATGGGACCCCGGTGAGAGACGAGGCTGCCGGCACCCCCACTCAGGACGAGATCATGGACACACCAGGGAGTGTGCCAGAATCTTTAGGGTCATCTGGAGGCCATACCCTCTCACCCACCGCCTACCGCAGCGAACCCTGGGATGCTGTGATCACCCCGTCAGGAAGCAACAGCAATGGAGACTTTCtggcctcttcctcctcttcccggTATGGAGCTGGAAAAAAGAGTAGCACAAAGTTAAAGGACGATGAAGTGATGAATGTGAGGAAGCCGGTCTCCTCCTCCCCCAGTAATGACATAAAGGGTAAGAAAGATGGACAACACGGCCAGATCAGGATGATGGGAAACAACCGGGGGATTGGAGAAAGGAGACTGTCTGCAGGTTCTCGTAAGGCCAGCAGCAGCTCAGATGATGGAGGTCTTAGTGGAAAAAGAGAGGGGAAAAGTCAGGCGTCTCCAGGTGGGGATGGGAATGAGGGCCAGTACCATCGTATTGAGACACTAGTGTCGCCCTGCACTGAAGGGGCCCCCATCCAAACTCTAGGCTACTCGAACCGCCCACTCGCTGGAGAGCGCATCAAGACGGTAGAGAGCATCCGTGTGATTGGCCAAGGCTCTCGGCGAGGGGGAGGGTCTGGCGGTCGGCCAGGGGGAGCGATGTGGTACGAAGAGGAGGAATACATGGAAGCTCAGCCTCCCTCACCCCATGCTGCCCCACCTCCTCTTAACATTGGCACCGAGGACAGGACCCCATCCatgcctcctcctcccccacatCTACTCCTCCCACATCTCCACCCTCCTCCGTCCCATCCTCACGCACATCCTCCTCCCCAAGCTCAGTTCCAAATGCCCTACCACACGGAGAACATTCAGGCTCCTCCTCCATCACTCCTCCACCAGCATCCTCCTCCTCAGTCCCATTTCTTCAGCCCTCCTCCACCGATCCCTCGACCCCCTCCGCCTCCCATACCACAGCGCCCTTCCCCTCCACCTACCCACCACACTGTGCCCTCTGCGGTCATGGTGGGGGGAATGTTAGTCCCTGTTGACCGTCCCCTTCCTCCCTCAGTCAGACCTGAAGGTGTAGAGCGAGGTGGCGGAGGGCCCAGAGGAAGCAAAATGGCCCCTCCCCCCCTCATGTCATCATTGCTAGGCGAGCCCCCTAAGCTGCCCCGTCCTGGCACAGTTAAAGAGCCTTTTGTCCCCCGCCATGCACCCCCTCTCCACCGCTTAGGTAGCCCCGGTGTTCCTCTACCCTTACTGGGCAGAGTGAAAGAGCCTCTGAATCTACCTCTTCCgcccccctctcccacatccTCCACACCCTCTCCCTCCACGCCTAATTCTCCTTCAGTCGAAACTCTCCCCACTCGCCTCACTGCGCAGTCCGCTGCCCCTGCTCTCCAAAAGCCCCCCACTAGTCCTCCAGCTCAGCCCCGCAATCAAACCTCTAACCCTGTCCCCCTCCTTAACTTGCCCAGTCCTCGACCCCCGATCCTCTCAGTCCCCATCCCACAGAGACCTCTGCTGCGAGGCCGAACCCCCTCTCAGCAGTTTAACCAAGATCGCCACATGGGGGGATTTCGTGGGGGCAAGCGGTCCGGTCCTCCGTTCACAGGCAGTCCCTTCCATGCACAGAAGAGACCCTTCCTACCCCCACGCTACTGAAGTGGTCATCTAACACATGCTGAATGAGAAGTGGAAGCGCCCTGCACCGAAGTGCAGAGTGTGTGTTAGCCCTGCTGcCCTTGTTTCTGTTAATGAGGACAATGATCGTCACTCTCACGCCCCGTCTTTACTGTGATTCAGGCCTTGGATAAGCTATAACTCCAGAAGAATTACTCTGCAGTATCTGTCGCACCTTTCTGTCCTCCTTTTTGAAACCACCATGCAGAAGAGGAGGGCGAAgataattatgtatttttatttccaACATAAATGTGTGCCTGTGCACGCTTCAAGTTAGACTGAGTCATGAAGATACTCGGTAGTGGACGGCGGGTGGGGGGGTTATTTCACCTGAACCACACTCCTTACTAGGCTTCAACATGTACTGACTTGAATAAAATCCAAGTTTCAATTCAactggggggtgggtgggggtatTTTATTTGGTCACTATCACTTGAATTGCGCTGTTGTAATTTATCTGCGCTGTTCAGCTGATTTATCTGTCTGTTTTCAGAGAAGTTGTTTTCATATATTTACATAGCTGCTGCCATTTTCATAATGCATTAACACGCATTTATTTTTTGCGCTGTATTTTTCTGCTTGACTGAATTGGCAATGTCCCGTTTTGCAGCAGCGCCGACAGATGGTATCGGGGGCGAAAACATTTGAGCTAATTAGGATTGTTTTGAAAATGGTTTATTTAAATACTCCAGTTGTTTTGGCCCCTTCCtctgttttgtttctttgctaATTTCATGCTTTTGCCCTTGAGCCCCTGTGCTTACCTTGTGCTCACATTGCTTCGTCCAGAAACACTTGTGCACCTCTCAAAAGTTCCgagcgttaaaaaaaaaaaaagaaaaaaaaaaaggtcaacacTATGGCAGTGTGCAGGACTTATTGCCGTTTGGCTTCCCTCTGTTCTACACTGATGTAGTTTGCCCACGCAGTGAGAGGTGCATGTTGGGTGTTGCTGCTCAAAGCCTCATGTCTCCTGTGTTTGTCTGATCATggagtgtgtgttgtctcctgTGCTCATTTACAGTTCATCAAGAAACACTGAGCACCTGCAAACGTTACCGCATAAAGTTAGATACATTGTAAAAATGTAACCACAGAAGAGAATATTTGTCACTACAGTGTTAGCACCTCATCAGAGTTCTGATGTTTTACTGAATGTTATACAAGTCTGTTACCACCTTCTGTAAActgtatgtcttttttttctgatcACTCATTGAAACAGCTAAATATCTACCCCAATCAGTTTGTTGTGAGAGAAGCTAGATtcttataaaagaaaaaaatccttcTGCTTACTAAGCACCTATCAAGTTCAACATTTCAATTGTCCCTGTAAATaacctctctctgtttcctctttGACAAATTGAGTTGGAAATTTACTGAAGATGTGACAAAAGCTGATGGTCTGTGTATATTTGATAAGTTGAATCTCTTACTGCTGTTCTCATCAATGATGCTATATCACCGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 157463 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 214500 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 224215 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 226945 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 285941 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 134497 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 216154 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 325326 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 430034 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 435874 22924592 ~ 22925155 (+) True G75045
XM_039806778.1 mRNA upstream 196 22461131 ~ 22469782 (+) True prpf3
XM_039805765.1 mRNA upstream 14256 22448519 ~ 22455722 (+) True LOC120562192
XM_039805190.1 mRNA upstream 103825 22357791 ~ 22366153 (+) True polr3c
XM_039805191.1 mRNA upstream 104208 22357791 ~ 22365770 (+) False polr3c
XM_039805192.1 mRNA upstream 124428 22339629 ~ 22345550 (+) True gba
XM_039806779.1 mRNA downstream 2035 22490753 ~ 22506497 (+) True tars2
XM_039806780.1 mRNA downstream 30400 22519118 ~ 22556292 (+) True adamtsl4
XM_039806461.1 mRNA downstream 71226 22559944 ~ 22585572 (+) False celf3b
XM_039806456.1 mRNA downstream 71227 22559945 ~ 22585572 (+) False celf3b
XM_039806458.1 mRNA downstream 71227 22559945 ~ 22585572 (+) False celf3b
XR_005639675.1 other upstream 163826 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 181684 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 270160 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 330755 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 333744 22132578 ~ 22136234 (+) True LOC120561539
XR_005639804.1 other downstream 71227 22559945 ~ 22585572 (+) True celf3b
TU100045 other downstream 128254 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 128254 22616972 ~ 22623084 (+) False arnt
TU100065 other downstream 171761 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 325326 22814044 ~ 22820053 (+) False myh14

Expression Profile