RNA id: XM_039806778.1


Basic Information

Item Value
RNA id XM_039806778.1
length 2853
RNA type mRNA
GC content 0.49
exon number 17
gene id prpf3
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22461131 ~ 22469782 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGCGTCCATTTCCTTTTCCGGTCTTGGATTAGAAACGTCGTGTGAACGGCGCCACCAAACAGAAAGTTTTTACTGAAAACTTAGCAGTTTGGGTGATTTTCGCTTCTTAAACTTGATCGTTTCTGTTTGACTTGTATTACGTAAGTCGGATAAAGGATAAAGACAGAATCGAAAGGATTGGGATATGTCTCTTCCTAAGCGGGAGGTGGAGGAACTAAGGCCATGGGTGGAGCGGACTGTGAAGAAGGTGCTGGGTTTCTCAGAGCCCACGGTGGTTACTGCTGCTTTGCACTGTGTTGGAAAGGGACTGGACAAAAGGAAGACCATAGACCAGCTGCGTCCCTTCCTTGATGACTCTGCGGGAGGTTTTGTGGAGCGTCTCTTTGAAGCTTTGGAGGAAAGCCGCAGTGCACGTGGCaacaaaggaggaggagaaaagcaCCGCAAGAGAGACCTCAAGGATGTGTTTGGCGATGAGCCTGAAACAGGTGCAGTGCGAGAAATTCAGGAGTCGGTAGATGGGACAGCACCAAAGAGGAAACGGGTCCCTCGCtttgaggaggtggaggagccTGAGGTCATACCTGGACCTCCGTCTGAGAGCCCTGGCATGCTCACCAAAATGCAGataaaacagatgatgGAAGCAGCCACGAAACAGAttgaagagaggaagaaacaaCTGAGCTTTTCCTCCTCAGTCCCTGCTGCACCACTGGAATCCCCTCCAGTCTCACGGCTTCTTGGCACATCCGCTGGTGCAGCTGCAGGTGGTGGCTCATCTATCGCCCCCTCCCAGGCTGCCAGCTTCATGAATGATGCTATCGAGAAGGCCCGCAAGGCTGCGGAGCTACAGGCCCGCATCCAGTCCCAGTTAGCCATGAAACCTGGTATCctcggagccttggggaacactgGGCCTCACAACCTAGTGGCACTAGCTAATCTACACGCTATGGGAATTGCCCCACCaaaagtAGAAATCAAGGAGGTGAACAAGCCAACACCTCTTATTCTGGATGACAAGGGAAGAACTGTGGATGCCAGTGGAAAAGAGGTTGAACTCACACACCGCATGCCAACACTGAAAGCAAACATTCGAGCAGTAAAGAGGGAGCAGTTTCGTCAGCAGCTTAAGGAGAAGCCTGGAGAGGACTTGGAGTCCACGTCCTACTTCGACCAACGTGTGACGATTACACCGGCTCAGCGCCCTCGCAGAGGCTTCAAGTTCCATGACCAGGGGCGCTTTGAGAAGATTGCTCAGAGAATAAGAACTAAGGCCCAGTTGGAAAGGTTGCAGAATGAGATTGCCCAGGCAGCAAAGAAGACCGGAATCCAGGCATCCACCAAACTGGCACTGATTGCCCCTAGGAAAGAGATTGGAGAAGGGGAGGTGCCCAACATTGAGTGGTGGGACTCCTACATTCTGCCCTACAACATAGACATAACACCCGACACAAAATTTGAAGAGTTGGAGCTCTTTGGTGTGACCAACCTGGTAGAACATCCTGCCCAAATCAGCCCTCCAGTTGACGCAGATAAGCCGGTAACGCTAGGCGTGTACCTGACAAAGAAAGAACAGAAGAAGCTGAGAAGACAGACACGAAGGGAGGGGCAAAAAGAAGTTCAAGAGAAGGTTCGCCTGGGACTGATGCCTCCACCAGAACCCAAAGTACGCATCTCTAACCTGATGAGAGTGCTGGGGACGGAGGCGGTTCAAGACCCCACGAAGGTGGAGGCCCATGTCAGAGCGCAGATGGCCAAGAGACAGAAGGCTCATGAGGAGGCAAATGCAGCACGCAAGCTCACAGCGGagcagaggaaagagaagaaggTCAAGAAGTTAAAAGAAGACCTCAGTAATGGTGTTCACATTGCAGTGTACAGGATCCGTAACCTGCAAAATCCTGCTAAGAAGTTTAAGGTGGAGGCCAATGCCAACCAGCTGTACTTGACCGGCACAGTAGTTCTGCACAGAGATGTCAACCTTGTTGTGGTGGAGGGAGGCCCCAAGTCCCAGAAAAAGTTCAAGAGGATGATGTTGCACAGAATCAAATGGGAGGAACACAACAGTAAAAGAGATGATCcagatggtgatgatgatacAAAGAGGAACAACAAGTGCTGGCTGATTTGGGAAGGCACAGCTAAAGAGCGTAGTTTTGGGGAGATGAAGTTCAAGCAGTGCCCCACAGAGAACATGGCCAGAGAACACTTCAAGAAACACGGCACAGAACACTACTGGGATCTAGCTCTCAGCCAGAGCGTGTTGGACGGCACAGATGACTGAAACCTCAATCAACCAAGCCCAACAGCCTCACAGTCAGTTGGCCTTCACTGTTGACTGGCTGCCTTCAAGTGAGGAAAGACGGACTTAATCAAGAGACTTGAACATAGAAAAGGAGGAACAATAAACCGTGTGGATCTTTTTGCAAGAATGTGTGACAGATGAGGGTGTGTaggactgtgtgtatgtgtgcgtatgCCTGCATCAGTGTTCATCTCTTTGTCGTAGGCTATTCTGTCAAATGTGGTCTGTTATTGAATAAAATCTGACAGATTGCTCTGTGATGTAAATAACTTACTCAAAGCTTTTTGTGATGACGAGAAATAGTGTCAGATTAtgctatgacattttttgtgcTGAAATCCCCATGTACACTAGTAATCCATGAGTCAAAGCAGTTATTAAAAAAACCACCCCATTACTGAATTACCGCACTGTTATTGTGCTAACACGTTTAGAGTAAACCTGGATAATGTTACGAAATTGTTATTACACGATTTATTGTGGTCATTACaggtgcatttaaaaaaaaaaaaagttcccaaatcaattttttttctttt

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12843 PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 148616 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 205653 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 215368 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 218098 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 277094 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 153433 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 235090 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 344262 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 448970 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 454810 22924592 ~ 22925155 (+) True G75045
XM_039805765.1 mRNA upstream 5409 22448519 ~ 22455722 (+) True LOC120562192
XM_039805190.1 mRNA upstream 94978 22357791 ~ 22366153 (+) True polr3c
XM_039805191.1 mRNA upstream 95361 22357791 ~ 22365770 (+) False polr3c
XM_039805192.1 mRNA upstream 115581 22339629 ~ 22345550 (+) True gba
XM_039805188.1 mRNA upstream 122198 22332416 ~ 22338933 (+) True dap3
XM_039806774.1 mRNA downstream 196 22469978 ~ 22488718 (+) True rprd2b
XM_039806777.1 mRNA downstream 196 22469978 ~ 22488718 (+) False rprd2b
XM_039806776.1 mRNA downstream 196 22469978 ~ 22488718 (+) False rprd2b
XM_039806779.1 mRNA downstream 20971 22490753 ~ 22506497 (+) True tars2
XM_039806780.1 mRNA downstream 49336 22519118 ~ 22556292 (+) True adamtsl4
XR_005639675.1 other upstream 154979 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 172837 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 261313 22197794 ~ 22199818 (+) False kcnn3
TU99946 other upstream 321908 22137565 ~ 22139223 (+) False LOC120561537
TU99947 other upstream 324897 22132578 ~ 22136234 (+) True LOC120561539
XR_005639857.1 other downstream 196 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other downstream 196 22469978 ~ 22488718 (+) False rprd2b
XR_005639804.1 other downstream 90163 22559945 ~ 22585572 (+) True celf3b
TU100045 other downstream 147190 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 147190 22616972 ~ 22623084 (+) False arnt

Expression Profile