RNA id: XM_039806779.1


Basic Information

Item Value
RNA id XM_039806779.1
length 2310
RNA type mRNA
GC content 0.52
exon number 18
gene id tars2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22490753 ~ 22506497 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCTGCTGTCCTAATCTGGGTTTCCGGTGTTATGGCCGCTTGCAGAGAAGGGCGACAGTAATGCGGGGTATTTGGAAATGACCGCGTGTGTTTAGGATGGCGGTGACCCAGCTGTTTCGACTGGTTATCTGTCGGTCGGCAGCTCGTGCGACGCTTCGCGTGCACAGGAGGTACAGCAAGGTGTGCCCAGCTTCATCTGAGCGACTGCGAGTCTTTGAGTCCTTCAGGGCAAAACATAGCAATAAGAGGAGATTTGAAGTTCCAGAaactctcctcactatccgacTGGCTGACGGCCGGACAGTAAAGGGAACAGCTGGTGTCACCACACCTCTCTTTGTTGCTCAGAGTGTCCGTGTGAAAGGTGCGCTGGTCAGTAAGGTGAATGGAGAGTTGTGGGAGCTTGGACGGCCCCTAGAGGCAGACTGCGAACTACAACTTCTGGGGTTTGACACAGTTGAAGGAAGACAGGCGGCATGGAGGACAGGAGCGTGCGTCCTGGGTGGAGTGTTGGAGAAGGTATTTGGTGCCGAGGTGTGCAGAGAAGGAGCATCGGAGCTCGGGCTTTACTGCGACCATCTGCTGGACAACAGTGCCTTGCCTCTGAGTGATGTGGAGGACAGATGTAAACAGGCTGCAGCCCTCAAACTTCCTCTGTCCAGACTGGAGCTGAATACAGAAGAGGTCCAAGAGCTCTTCCAGAACAGTAAGCTAAGAATGCAGCTTGTTGAGGAGCAGATGAATGGCCCCACCATCACAGTATACAGGTGTGGAGACAGTATAGCGGTCTGCAACAGCCCCCTCCTCCCACACACTGGCCTCCTCAAGGTCTTCAAGAcaatccagCTGTCGCCCGTGACTCTGGCCAATCAGACAGAGTCCTCAGGTTTGATGCGTCTTTTAGGTGTAGCCTTTCCAGGAGAGAAGGACAAGGAGGAGTGGGAGAGGGAGCAGGAGGAGGCGAGGAGAAGGGACCACAGACGCATAGGGACGGACCAGGAGTTGTTCTTCTTTAATGATGTAAGTCCAGGCAGCTGCTTTTTCCTGCCTAAAGGAGCATACATCTACAACACCCTCACTGACTTTATTAAGAGTGAATACCGAAGGCGAGGATTCAACGAGGTTGTGACCCCAACCCTGTACAGCACTGCATTATGGGAGCGCTCGGGCCACTGGGAACACTACAGCGAGAACATGTTCACTGTGACATCAGAGGGCTCTCAGACCTACGCTCTCAAACCCATGAACTGTCCTGCGCACTGTCTTATGTTTGAGCAGCGTGTTCGCTCGTGGAGGGAGCTTCCTCTGCGATGGGCCGACTTTGGGGCGCTGCATCGAAATGAGCTCTCCGGAGCGCTGGGAGGTCTCACTCGTGTTCGAAGGTTCTGCCAGGACGATGCTCACATCTTCTGCACACCTGAGCAGCTGGAAGAAGAGATTGTGGCATGTTTGGATTTTGTGAAGAGTGTGTATCAAGTTTTTGGATTTTCCTTCCACTGCCTCCTGTCTACACGTCCTACACCATGCCTCGGGGAGCCTGAACAATGGGATAATGCTGAGCAgcagttgGAGAGGAGTCTGCAGCACTTTGGTGAATGTTGGGAGTTGAACCCAGGAGACGGAGCCTTCTATGGACCAAAGATTGACATCCAGATCAAAGATGCTATTGGCAGACAACACCAGTGTGCCACAATCCAGTTGGACTTCCAGCTGCCGATCAGATTTGATCTTCAGTATGTCGGTCGGGACGGACAGTTGCACAGGCCAGTGATGATCCACAGGGCAGTGCTGGGATCACTGGAGAGAATGATCGCTATACTGGCTGAAAACTTTGGAGGGAAATGGCCACTGTGGTTGTCCCCAGCGCAGGTCATGGTAATTCCTGTTGGGGGCAACAGTGAGTCATACAGCAAACAGGTGGTCCGGCAGTTCTGTGAAGCTGGCTTCATGGCAGATTTGAATGATGATCAGGGAGCAACCTTAAATAAGAAGATTCGCTCTGCTCAGCTGGCCCAGTACAACTACATATTTGTGGTGGGGGATAAGGAGAGTGAGAGTGGAACGGTAAATGTGAGGAGCAGAGGGGGTAAACAGCTTGGGAGGAGGCCGACAGAGGAGGTGCTTACATCCCTCACCCAGCTACGAGACACGAGGAGCAACCTAGACGAGTTTTAATGGAAAAAGTCCTGGAAAGAAGGAGTCATTGATgtaataaatgtttgttttacatgTTCAAGCTGTTATACTTTGGCTTTGTCTGAAGAGATGGCTGCTAAAATTTGTAATTAAAGTATATAAAAGATTCCTTA

Function

GO: NA

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99986 lncRNA upstream 178238 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 235275 22255271 ~ 22255478 (+) True G74769
TU99984 lncRNA upstream 244990 22245489 ~ 22245763 (+) True G74765
TU99983 lncRNA upstream 247720 22242817 ~ 22243033 (+) True G74764
TU99977 lncRNA upstream 306716 22183783 ~ 22184037 (+) True G74760
TU100051 lncRNA downstream 116718 22623215 ~ 22625953 (+) True arnt
TU100074 lncRNA downstream 198375 22704872 ~ 22705303 (+) False LOC120562539
TU100087 lncRNA downstream 307547 22814044 ~ 22820053 (+) False myh14
TU100374 lncRNA downstream 412255 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 418095 22924592 ~ 22925155 (+) True G75045
XM_039806774.1 mRNA upstream 2035 22469978 ~ 22488718 (+) True rprd2b
XM_039806777.1 mRNA upstream 2035 22469978 ~ 22488718 (+) False rprd2b
XM_039806776.1 mRNA upstream 2035 22469978 ~ 22488718 (+) False rprd2b
XM_039806778.1 mRNA upstream 20971 22461131 ~ 22469782 (+) True prpf3
XM_039805765.1 mRNA upstream 35031 22448519 ~ 22455722 (+) True LOC120562192
XM_039806780.1 mRNA downstream 12621 22519118 ~ 22556292 (+) True adamtsl4
XM_039806461.1 mRNA downstream 53447 22559944 ~ 22585572 (+) False celf3b
XM_039806456.1 mRNA downstream 53448 22559945 ~ 22585572 (+) False celf3b
XM_039806458.1 mRNA downstream 53448 22559945 ~ 22585572 (+) False celf3b
XM_039806457.1 mRNA downstream 53448 22559945 ~ 22585572 (+) False celf3b
XR_005639857.1 other upstream 809 22469978 ~ 22489944 (+) False rprd2b
XR_005639856.1 other upstream 2035 22469978 ~ 22488718 (+) False rprd2b
XR_005639675.1 other upstream 184601 22296848 ~ 22306152 (+) False rusc1
TU100002 other upstream 202459 22285304 ~ 22288294 (+) False fam189b
TU99979 other upstream 290935 22197794 ~ 22199818 (+) False kcnn3
XR_005639804.1 other downstream 53448 22559945 ~ 22585572 (+) True celf3b
TU100045 other downstream 110475 22616972 ~ 22623084 (+) False arnt
TU100052 other downstream 110475 22616972 ~ 22623084 (+) False arnt
TU100065 other downstream 153982 22660479 ~ 22667544 (+) False LOC120562537
TU100082 other downstream 307547 22814044 ~ 22820053 (+) False myh14

Expression Profile