RNA id: XM_039806792.1


Basic Information

Item Value
RNA id XM_039806792.1
length 3572
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC120562869
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20352377 ~ 20358197 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATATCCAGTTTTCCAAAACTTAAATTGACATGcattcagtttttgttaaattattttcaAACTTAGACTAATCATGAGGTCATAAATCAACCCATGACAAGTTTGTCTCAGCAAACAAGAACACTAACCTTAATTTTTAACTAGAATTGTGTGGGTTTTCCAAATTGGGGCCCAATTGCTTGTTAGTGGGCATATTTGGGTTGGTAACATTAGGATACAATGTCCAGTTGACTTTAAACTTGTTTAAAGCTATTAGACATGGGCACGGGGCTTTACAGAGGCCTTTTGTTCAAACAAGGGGAAAGTGGTATCAGTCCTCTGACAAGGATGTGGGTGACTGGGAGGTGCGAAGGCCAAATTCCCCACTTGGGTTCAGAGCACTGACTTCATTTGTGCCTTGTCTTGGATGCACAGATGTGGAGTTCATGCAAGTGCACATTTGTATGTGGGTTCTTTTGGACAGTAGGTTGAGGCCCAAATGTCCAGGCTTTATTGAATGATTGTGACCTTGTGCTCTGGTAACAGAGTACTGACAATGAGAAGctgattttgttttgactcattcATACATGAGACCATATCACATGCACCATTTAGGCATTTTGCACATTGACTATATAAAACTTTAAAAGTCTTTAATTTTACTTAAATGgtttgtttaacccttgtgttgtcctttgggtcactgggacccgaaagACAACCAAAGGGTTAAAATGTGTACAAATCCACAACTATTTTCCAGAGGACATTCAGTTTTCCCAACTCAGATTTTTAAATGCCCTATTAATGATTAAGCTTACTCTGGATAGCTGTGGGTGAAGGCTTTAAGCAGACATTCTTTTATAATGGTTTAACCCATTCAAACACATCACACCATGAGCTGATGAATTCTTGTTTTAATGGTTCTTGCTTGAGCTGCTTTGTATGCGCAAACATGACAATTGTTTAAACACTTCAGACAACCTTTTCTGTAGGTTTTTCAATCCTCTGCAGAtggacacacagcaacacatgcacaaagtgcatacatgCTCGAATCAGTGAGAATAACTTATTTATCCAACTTTAAGATCAAATATATCGGACAAGTctctgttcttttaaaaataaatgctttgtaGGTTACACAGTCAGCCTCATACTGGAGTTGCTGAGTCTGTTTCATGAATAAGAAATGGTCAATACATGTCTTGGACTGCTATGTATCAATAGTACATCAAAAATAAACTGCCTAAAATGTAACCAGGACATAAAAGTGATTTATCAAACTGCTTCGGAGTATCAGCCAGCAATGTGAGGTGCTTATTCCAGCAAATGTTTTGCAACAAATTATTAAAATGGTTTTGAAAACTACGCTATATTTTTCAAATATCACATAAGTACTAATGATGTAATAACTGGATGAGGCCTCACTCAAACAAATCCAAGACCAAAAgtgattattttttatgtatatatattttttcctttgtgCTGCATTACTTGGCTTGgtccagagtgatagagaaagacatggCTCGGGCTTGGTCATTTGAGTTATGACGTGAATTTGAAGACTTCAAATCTCACTGCAGTTTATTTTGCAGACCCATGCTACCCCCTTACGGCTGATACTTGTAACGGCAATTATTGGACAGTACCACTATATCCTAATAAAGGGGTGCAATGTTCACATTTAGTCGTGAAATGGACAAGGGTTTTATGAGAGTCTgtctttaacaaaaaacatgtaAGTCAATATACTTTAAGACAATGTTTTCTCGATTATAATAtccactgtacagttttcttgtctttgtccAGATGAAATGATCCGGAATGACGTCTTACGTGACGCCATCATCAAACATGGCTGAcgaagaaaacacaaacatggaAGTCGataaggaaaagaagaaacctTTTGCTACCACAGTTAAACCACTCGTTGACGAGGTTACCCAACGAATTGGCAACCAGAACAATGTCGAAGGCAAAAAGGACGCCGGTGAAAGCAGCCCCACAACGGAATACTGCGAGAAGCTGCAGGGGTGGATGTGGCAGTACTACACGGGATATGTGAACTGGCAGAGCTGGATGGCAGCGTCAGCCATGTCCTCACCTTATTATTTACAGTCAGCCAGTGGGGCGTCGACGGTACCACTTGATATCAATTCCCAGAACTGGTATAACAGCCCGTTTGGTCTTCCGTTGTCGCCTTATCCACCTGCCGTCTCCCAAAGCATCCGGGTAGGTGAAGCCGCTGGCGGGGCTGCAGTGGCCgctcagcagcaacagcagccgCGGGAGAACGGAAATgcacagagaccagGTCGGGAGTATAGCATTCCTTCACCTCTCCAAAGACTCCTGGCTGAGATGGTGGATTTTTTCATACTGTTTTTCATCAAAGCAACCATAATCATCAGTATTATGCATCTTAGTGGAATCAAGGATGTTTCCAAGTTTGCCATGCATTTCATAGTGGAGGAAATAGATGAGGACACATCGATGGAGGAGCTACAGAAAATGATGCTTGTTGCACTCGTGTACCGGATATTAGTTTGTTTTTACGAGATTGTGTGCATTTGGGGAGCAGGAGGAGCCACTCCAGGGAAGTTTCTTGTTGGACTCAGAGTTGTCACGTGTGACTCATCAATTCTGGTTCAGCCTAACAGGGTGCTTGTAGTGCCAGCAACtaatgtctctctgtctgcATCCACTGTCCGAGCCTTGAACAAGAACTTTTCAATTGCCTTCTTTTTCCCAGCCttcatcacacttctgttcttCCAGCACAACAGGACTGTGTATGATATGGTAGCTGGTACAATTGTTGTCAAACGCTCCAGGATCAGATGACCCAGAAGAGAGTCCTACACTATTACTGAAGATGCACAGTGCTAATGTGTTTGGTTTTATAAATACCTGCAGAACTCAGACATTAGCCTTTTAAGGTATCGTCAGAACATGCAGGAGCATTAAGATGGTTGCAGAGAGTTTGATGCACATCAGTATGAACTATCGCAGTTCCCTACAACTTCGGTTTGGTTTGTCTCGGACACCTActgtatttctgcatgtattgcTACATGCTGCTTTCAGAAACTGTTCTGTGCCAAATTGATGTCTCCTTTGAAGACAGGAATAATTATGGTATATGCTACCATTCCGTTAACACAACATTTGCCTCCTTAAAATACTAATCTTCCAGATTAAGGGTGAATGTCTCGTATCACTCAGTATTGAAGTTGCTCATCATGCATTCATGAGATTATACCTTCAGTATCTCTTTGTATTCAGATTTTGTCTTAAGAGAGTTGTATACTCAGatttttcaattttgagttGTTGACCTTCATCACTGCAGGAGTGATGGCCTCACAATCAGCTCTTTTAGCTGCTGAAATGCTGTGGTTCTTAGGCACATTTAAATGTATCGAAAGGAAATGTTAACCTGATCACAATTGCTTTTCCTTTTACTCTGAAAGCATGTGTGTGACTGAAATTTAATGTATGACACATTTTATGTGATTAGCTGTTATTTGCATTTAAAAAGATTAAATGAAACCACAACTATTTCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99064 lncRNA upstream 11450 20340341 ~ 20340927 (+) True G74081
TU99041 lncRNA upstream 26469 20322330 ~ 20325908 (+) False gra
TU99044 lncRNA upstream 34260 20314484 ~ 20318117 (+) True G74067
TU98940 lncRNA upstream 135038 20216207 ~ 20217339 (+) False si:ch211-257p13.3
TU98936 lncRNA upstream 143050 20207847 ~ 20209327 (+) False LOC120561838
TU99077 lncRNA downstream 44626 20402823 ~ 20423897 (+) True G74091
TU99110 lncRNA downstream 117967 20476164 ~ 20476367 (+) True G74116
TU99113 lncRNA downstream 126513 20484710 ~ 20484943 (+) True G74119
TU99115 lncRNA downstream 150536 20508733 ~ 20520082 (+) True G74121
TU99159 lncRNA downstream 242140 20600337 ~ 20605105 (+) False glipr2l
XM_039806793.1 mRNA upstream 136 20350979 ~ 20352241 (+) True fabp4b
XM_039806789.1 mRNA upstream 14783 20333253 ~ 20337594 (+) True stmn2a
XM_039806788.1 mRNA upstream 20648 20326946 ~ 20331729 (+) False upp1
XM_039806786.1 mRNA upstream 20648 20326948 ~ 20331729 (+) True upp1
XM_039806787.1 mRNA upstream 20648 20327193 ~ 20331729 (+) False upp1
XM_039806791.1 mRNA downstream 9907 20368104 ~ 20380083 (+) True LOC120562868
XM_039805895.1 mRNA downstream 90030 20448227 ~ 20475554 (+) True si:dkey-12j5.1
XM_039805896.1 mRNA downstream 90030 20448227 ~ 20475554 (+) False si:dkey-12j5.1
XM_039806762.1 mRNA downstream 242126 20600323 ~ 20605165 (+) True glipr2l
XM_039805369.1 mRNA downstream 273261 20631458 ~ 20641851 (+) True LOC120561989
TU98645 other upstream 702866 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1193382 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1193382 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 1605702 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 1698740 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 649836 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 1044930 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 1240858 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 1411351 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1774381 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile