RNA id: XM_039806807.1


Basic Information

Item Value
RNA id XM_039806807.1
length 1722
RNA type mRNA
GC content 0.54
exon number 2
gene id plekhf2
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35268357 ~ 35309397 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGCTCCGCTGccatattgttgttttattttcggGGCAGCAGCGGACGGAGTTTCCAGCTGCGGTCGCTGTCTGCGGACTCAGCGTCTCCGAGGGGGGAAGAGGCACTGCTCTGCTGACATTATCTGGAATACAACTGAGCTTCAATCACTGTCAAAGTTATCGGACTGCGAGAGGAGCCGTCGGGTGAGGTGAAGATGGTGGACCGGCTTGCGAACAGCGAGGCCAACTCCAAGCGGATCGGCGTGGTGGAGGGCTGCTTCGGCGCGGCGGGCCAGCCGCTCGCCATCCCCGGCCGCGTGCTGATCGGCGAGGGCGTCCTCACCAAACTCTGCCGCAAGAAGCCCAAGGCGCGGCAGTTCTTCCTCTTCAACGACATCCTGGTCTACGGCAACATCGTCATCCAGAAGAAGAAGTACAACAAGCAGCACATCATCCCGCTGGAGAGCGTCACCATCGACACCGTGCCGGACGAGGGCGACCTGCACAACGGCTGGCTCATCAAGACGCCCACCAAGTCCTTCGCCGTGTACGCCGCCACCGCCAACGAGAAGTCCGAGTGGATGAACCACATCGGGAAGTGCGTCGGGGACCTGCTGCAGAAGAGCGGCAAGGCGCCGACGGGCGAGCACGCCGCCGTGTGGGTGCCCGACTCGGAGGCGACGGTGTGCATGCGCTGCCAGAAGGTGAAGTTCACGCCGGTCAGCCGGCGCCACCACTGCCGGAAGTGCGGCTACGTGGTGTGCGGGCCGTGCTCGGAGAAGAAGCACCTCCTGCCCAGCCAGTCGTCCAAGCCCGTGCGCGTCTGCGAGTACTGCTACGTGCAGCTGACGTCGGGCGGCCTGGCGCCGCGCTCGGACTCCATCACCCGGCTCGGGTCGAAGTTCAACAACCTGTcggacgacgacgacgacgacgacagCAGCGACTGAGGATCAAGGccacccccccccgccccccacccCTACGGCGAAGAGGAAACActtcccttttcttttgagTTTCTTTCTCCTCCCACATGATCGAATCATGCGCCGCCCTCCTCCGAggattcatattttaattctcttcaaaccaaaatatattatttttttcccctctaaTTCCAGCATGGATacatgttgttgtgtttttcctgAGAACCGTGATTCAAACAATGACGTGTGGAATTAGCCCGGGGCGACCGGCACAGCTCTGGGAGACAGACTTGACTCTTCTTCATCGCTCCCACTCTGCTCCGTCTCTTTTGACTCTCGATTAGGCTGCGATTGGTCACTACAGAACTCAATGGTGCTAATGAGAAACacccccctcctcttctctctctctctctctctctctctctctctctctctctctcctctttaagtTTATTTCGTCTAAgaggcttcttttttttttgctccagtttttattttattgaactgAACAAGGTGATTGTGCTTGTAATTTCTGCAGGGAACGCAAATGTTTTGGGCTCTAACCTTTTTATCTCCTCTGTCCTTCAGGTAATGACaccaaactgttttttttttgtttttttttctactagaAGTTTGGTATTTTTCTTCCCTATTTTGTAAATTTCCCTCATGCAAAAAAAATTTCAAGATCCCTTTTTTGATATAAATAACATGTAGATATTACTCTAAACCCAGAGCTTTTTCTAGTTGACCTAATATAGTTGCTTCTGACAAATCAGCTGAAGTTTCTCACAGTGAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105042 lncRNA downstream 3531 35261787 ~ 35264826 (-) True G78566
TU105043 lncRNA downstream 6688 35260185 ~ 35261669 (-) True G78567
TU105041 lncRNA downstream 25293 35242859 ~ 35243064 (-) True G78565
TU105039 lncRNA downstream 28584 35239412 ~ 35239773 (-) True G78563
TU105038 lncRNA downstream 29596 35238560 ~ 35238761 (-) True G78562
TU105063 lncRNA upstream 39589 35348986 ~ 35350176 (-) True G78582
TU105064 lncRNA upstream 42565 35351962 ~ 35352212 (-) True G78583
TU105073 lncRNA upstream 82653 35392050 ~ 35392352 (-) True G78591
TU105108 lncRNA upstream 95950 35405347 ~ 35407517 (-) True G78613
TU105109 lncRNA upstream 104669 35414066 ~ 35414386 (-) True G78614
XM_039807202.1 mRNA downstream 157681 35102976 ~ 35110676 (-) False sri
XM_039807199.1 mRNA downstream 157681 35102976 ~ 35110676 (-) True sri
XM_039807203.1 mRNA downstream 157682 35102976 ~ 35110675 (-) False sri
XM_039807201.1 mRNA downstream 157682 35102976 ~ 35110675 (-) False sri
XM_039807198.1 mRNA downstream 158219 35102976 ~ 35110138 (-) False sri
XM_039807233.1 mRNA upstream 99925 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 99925 35409322 ~ 35448297 (-) False ndufaf6
XM_039807235.1 mRNA upstream 99925 35409322 ~ 35448022 (-) False ndufaf6
XM_039806165.1 mRNA upstream 244826 35554223 ~ 35565907 (-) True LOC120562452
XM_039805925.1 mRNA upstream 269312 35578709 ~ 35819797 (-) True si:dkey-22o22.2
TU104958 other downstream 91118 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 132196 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 133295 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 134622 35133664 ~ 35133735 (-) True trnap-agg_6
TU104853 other downstream 253835 35012103 ~ 35014522 (-) True G78444
TU105304 other upstream 715334 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 793600 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 1039832 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 1039832 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 1355145 36664542 ~ 36748224 (-) False LOC120563186

Expression Profile