RNA id: XM_039806811.1


Basic Information

Item Value
RNA id XM_039806811.1
length 2516
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC120562882
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13609618 ~ 13621344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACTGTAAACATCCTGCCGATTTTAAAAGGACAGCGGTGAGCGGGAGGAAGGCGACTGGCGCCATCTTGGCTGTTTTAATGAGTACAACAGGGGAGGATTCGCTGGGAGAAATAACATAATTATTGGAATTTCACTGTAAAAGGGGTACTGTCGGTGGACCATACAGCAGTGTGATTGTGTGAGCCAGGGGAACCAGGGCAATGTTCTACGCCCACTTTGTCCTCAGCAAGCGTGGGCCGCTGGCCAAGATCTGGCTAGCGGCCCATTGGGACAAGAAGCTGACCAAGGCCCATGTGTTTGAATGCAACTTGGAGAGCAGTGTGGAGAGCATCATCTCACCCAAGGTGAAGATGGCATTGCGTACATCAGGCCACCTGCTCCTCGGGGTGGTGAGAATCTACCACAGGAAGGCCAAGTACCTGCTTGCTGACTGTAATGAAGCCTTCATCAAGATCAAAATGGCTTTTAGACCAGGTGTGGTGGATCTACCTGAGGAAAACAGAGAGGCAGCCTACAATGCCATCACCTTACCTGAGGAGTTCCATGACTTTGACCAGCCACTTCCTGATCTGGATGACATAGATGTGGCCCAACAGTTCACCCTGAACCAGAGCAGAGTAGAAGAGATCACCATGAGGGAAGATGTTGGCAACCTCAGCCTGCTGCAGGACAATGACTTTGCTGACTTTGGTATGGATGACCGAGAGATGATGCGTGATGCCAGCACATTTGAGGAGGATATCATGCACGGTGCCACAGCCTCTAACCTTTTGCTTGAGGCTGAGCCTGGCCCAGCCAATCTCCCAGACAAGTCCAACCACATGGAGTATGATGACTTTGGGGACGGTTCAATGGGCAACAGTGATGGGGGAATGCTGGTTGATAAGCTACTGAGCTCTGAAGATGGAGGAGGTATTTTTGATGACCCTCCAGCCATCACAGAAAGTGTCATGATGCCTCGAGATCCCGGCGATGATGAGGACGACTTTGACAACCTCCAGTCACCGGGTCCAGACAGCCCAGACTCTGGCCCAGCAGAGCCACTGCCAGCAATGGCTGACCAGACGGAACAGACCACTCTGGTTCACAATGAGGAGGAGGCCTTTGCCCTGGAGCCCATTGACATCACTGTGAAAGAGACCAAGGCGAAGCGTAAGAGGAAGCTGATTGTGGACAGTGTAAAGGAGCTGGACAGTAAGACCATCAGGGCCCAGTTGTCTGACTACTCGGACATTGTCACCACCCTGGATCTCGCCCCTCCCACCAAGAAGCTTATGATGTGGAAGGAGACTGGAGGAGTGGAGAAGcttttctctctgcctgctCAGTCACTCTGGAACGCCAGGCTGCTCAAGATGTTCACACGCTGCCTGACACCCCTGGTGCCAGACGagctgaggaagaggagaaagggCGGCGAAGCAGACAGTCTGGATGAGTTCCTCAAAGAGCTGGAGAACCCAGAGGTGCCTAGAGAGGAGGTCATGAGTCAGAACAGAGATGTTATTGACCAAACTATCATGGAGGAGCCCAGTATGCTGGCAGCCTCTGCAATGGAGGGCAGTAGGACGACCCTGGATGAAACGGTCATGCCTCCTCCATCCACCCCTCGAGGTGTCAAACGCAAGACCCTCGACAAAGAGGGCACCCTTCCTATGGCTCCcttggagcagcagcagcagcaggtggcTGACCGCTCAGTCCTGTCTCAGAGGTTAGACATGCATCAGGTGGATCTTCCCCCAGAGGAGAGCAGCCTCAGCCTCACCCAGCTTGTCCCCGAGCTTGACCTGCTTGGTGAAAAGGGCAAAGACAAGAAGGATGATAGCGATGAAGAGGAGGATGAGGACGGTCAGGGTGGAGACCAGGATCAGGAGGAGAAGAGATGGAACAAGAGAACCCAGCAGATGCTGCATGGCCTCCAGCGCGTCATGGCTAAGACTGGTGCGGACTCAGTTAGCTTGCTTGAATTGTGCCGGAACAACAACAAGAAGCAGGCAGCTGCCAAGTTTTACAGTTTCCTCGTCCTCAAGAAGCAGCAAGCCATCGAGGTCACCCAGACTGAGCCCTACAGCGACATCATTGCCACCGCTGGACCAAGATTCCACCTTATTTAGACATTGGaagaacagacaaacactctGCTTGCAACAGACATACTTTTTAAATTACTCaacttttttgcctttttattttgtgttttcctgTTCCATTTTCTCTGGGGAAGGGGAGGGAGTAGTGGGGAACGGGTTggaattttaaaaacaaaacacgaTTTTACTGTACTACAGATGGAATCATGCAGTATTCAATTGGTTGAAATGGAGTGAGGAAGAATGTCTCTAACAAGTATATTTATAAATCAACCTTTTTTTCAGTCACCAATTTGTaagcttttctttattttgttttgtaagtTAAATTTCTATTGTCTGCTTATTCCATAAGTTTTGTACCATTGCCCCTCACAACGTAATTATTGCAGATTTTAGATAAAGAGCCCTGTATTTTCA

Function

GO:

id name namespace
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K06670 SCC1, MCD1, RAD21; cohesin complex subunit SCC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96607 lncRNA upstream 3373 13559760 ~ 13606245 (+) False LOC120562530
TU96612 lncRNA upstream 76616 13532125 ~ 13533002 (+) True G72319
TU96603 lncRNA upstream 126507 13475370 ~ 13483111 (+) True G72314
TU96597 lncRNA upstream 136148 13471751 ~ 13473470 (+) True G72309
XR_005639803.1 lncRNA upstream 161379 13445866 ~ 13448239 (+) True LOC120562636
TU96663 lncRNA downstream 66245 13687589 ~ 13688485 (+) False LOC120562711
TU96714 lncRNA downstream 420544 14041888 ~ 14046049 (+) False LOC120561928
XR_005639660.1 lncRNA downstream 465259 14086603 ~ 14087796 (+) True LOC120561831
TU96799 lncRNA downstream 542192 14163536 ~ 14163744 (+) True G72466
TU96813 lncRNA downstream 746922 14368266 ~ 14370091 (+) False LOC120562174
XM_039806252.1 mRNA upstream 3451 13566151 ~ 13606167 (+) True LOC120562530
XM_039805705.1 mRNA upstream 138102 13468211 ~ 13471516 (+) True prelid3a
XM_039805214.1 mRNA upstream 191166 13414324 ~ 13418452 (+) True LOC120561886
XM_039805216.1 mRNA upstream 197697 13395438 ~ 13411921 (+) True rspo3
XM_039805217.1 mRNA upstream 197697 13395438 ~ 13411921 (+) False rspo3
XM_039806562.1 mRNA downstream 3104 13624448 ~ 13688514 (+) True LOC120562711
XM_039805270.1 mRNA downstream 132709 13754053 ~ 14046136 (+) True LOC120561928
XM_039805112.1 mRNA downstream 437296 14058640 ~ 14068948 (+) True zgc:110410
XM_039805546.1 mRNA downstream 512240 14133584 ~ 14144295 (+) True cmc1
XM_039805720.1 mRNA downstream 554473 14175817 ~ 14367261 (+) False LOC120562174
TU96598 other upstream 139168 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 483721 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 836179 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1900109 11708453 ~ 11709509 (+) False LOC120561922
TU96069 other upstream 1993376 11599037 ~ 11616242 (+) False G71896
TU96779 other downstream 512267 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 554505 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 804450 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1005134 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 1405238 15026582 ~ 15026653 (+) True trnae-cuc_16

Expression Profile