RNA id: XM_039806812.1


Basic Information

Item Value
RNA id XM_039806812.1
length 3686
RNA type mRNA
GC content 0.54
exon number 16
gene id pou2f2a
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24560065 ~ 24598707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTCTCGCCTCAATGTTGCGGCCATCCTAGTGGCAGATCGCTACAATCCTGGAGGGAGCCGGGTCGAATGAGCTATTGGGGTTCCCGATAATAACGGGGACAAACAGACAGGcaaaaaagacacacagacgGATGGACGGAGATAGGCAAGTGTTCCGAAAAAACGCGAGACCATAACCGGATTCTATACGTTTTCTTATTTCCGTTGTTTTGCGTTTttagtattttaaattatttatttattcgctgtatttatttatctatcgaTTGATTGCGTTTTAATTACTGCCTTGTGACAGAGAACGAGGGAGGAGGGGCGTCAGGGCCAAGCGCGCgcgttgtgtttgtgtgcgtgtgagagtcCGTGCAGccttccccccaccccccacttgtttgtttatttatttgttgatgATAGCCTTTATTGaagctgttttaaatgtgctcgcGACGCGATCCGCTGCTTTGCGCGAGCGGATGAATGTCTATATGTAGCCTTCATGcaaaggagagagaagaaggagCGCGTGCAGCTAGAGACCAAATACAATAGATCAAACCAAATACTACAGAAATCCAAATAAGACTTTCTAACTCTGCTGGCCTTTTTACACTGTCTTGCCTCTTTCTATGTATCATCATTTATTGTGCTGTTTTAAATTGCAAAACGAATACCAAAGCTCAGCCCGCCTGGTGATGCTACAGGAGTAGGCTAGCGACTGTTCTCATGTCTTTTCACACCTATAGGAAACATTACTGGTGAGGGAGTGAGAGGATAAAATAAGCTCTATGTTTACTCAAGGAGAACGCTCTAGCAGTGCAAAGGTAACAGAGAGACGCAGGTGCATCAACGACAGGCAGGTGACATACAGCCTTTTGATATAACGCCACTACAATAGGCCTGTAATTGTAACACAACTTTTCCGGTAGCCTGCAGAAGTGAGGTCTGATCTCCTCTCTATCCGTCTGTGTGTTAGTCTGGACTGTATGTAAGATAACTGCTGCACTCAAGGGACCATCCTACATATATGTTCTATGCACATTTACACCAAAACTAATGCCGGCCACCAGTCGACATccacaaatgtaaataaaagggCGCCGCTTGCCTACATGTGTACACACCTAACGGTGAATGTTGTGAGCTCTCCATACCAAATATTTTCCCAAAGCTGTCTACCAGAGAAACGGACGAAGACACAGAAGCTTCAGAAGAGGACAGAGCTTATTACAGCAATTCTGTCAGATTATTTGCATCAAAACAAGAAGCCGGAGGAAGATCATGTTTGTTCCCTTGCCAGTGCCGTTCGTGTTTCAGAGAACTGCCCCTGACCTCAACGCCTGGCGTCTCAAGTCCCCTCTGGCTCTTCGCTCCAACTCCGATATCAGGATGTCAAAGCCAGTAGAGGTAGAGAAAGCAGGGGCTGAGTCACCGATGGAGGGCACGGACTCAGAGCGGAATGGACCTGAATCAAATCACCAGGCTCAGTCAATGAAAGTCAATCCCTTTCCCCTTTCACCAACCCTGAGCAGCAGCAAGCATAAGATGGAGGAGTGTGGTGAGATGTCCCCggcccttcctctctctcacggCCCGACCCCCTCACAGACGGCCCTGCAACATACACAGCTCATGCTGACCGGCTCCCAACTAGCAGGGTTAACAGCTCTGTtgccagcgcagcagcagctgttgcTGCAGCAGGCTCAGGCACAGCTCCTGGCTGCAGCTGTGCAGCAGTCCAGTGCAGCACACGCCGCTCATGCTGCCCACGCAGCTGCCCAAGCAAATCAGCAAGCTCAGGCAGTCGCAGCAGCAAATCAGCaagcccagcagcagcagcagcaggcgggACAAACGGGGCAGCAGGCCCAATCACAGTCCCAGGGACAGAGCACACAGGAACAGATAGCCCAAAGTGTCTCTGTCCCACCTCATCCACCCCAGCTCACCCTCTCCCAGCCAATCCAGCTCACCGCCCAGGACATCCAGCAGTTGCTGCAGCTTCAGCAGTTGGTGTTAGTGCCCGGCCACCCGCTCCCATCCCCTGCCCAGTTCCTCCTCCCACAGGCACAGCAGGGCCAGCAAGGACTCCTATCGACACCAAATCTCATTTCGCTACCTCAGCAAAACCAAGGGAGCCTGCTGTCTGCTTCAACTAGAATGGGACTCCAAGCACAGCGAGATAAGAGTATGGAGGTGAGCGGTGTGACCACGGTGCCCTCAGTGACCTCTCACCCTGAGGAGCCCAGTGACCTGGAGGAGCTGGAACAGTTTGCCCGTACTTTCAAACAGAGACGCATCAAACTGGGCTTCACACAGGGAGATGTTGGTTTGGCCATGGGGAAGCTGTATGGCAACGACTTCAGTCAGACCACAATCTCCCGCTTTGAAGCCCTCAACCTAAGCTTTAAGAACATGTGCAAGCTGAAGCCACTGCTGGAGAAGTGGCTCAATGATGCAGAGACCATGTCCACAGACTGTACCATGCCCAGCCCCAGCTCCCTGTCCTCTCCCTCTATGGGCTTCGACGGGATTCCTGGTCGCCGCAGAAAGAAGAGAACCAGCATCGAGACGAATGTACGCGTGGCCCTGGAACGCGCATTCATGACgAACCAGAAGCCTACCTCAGAAGAGATCCTGTCGATTGCAGAGCAGCTCAACATGGAGAAGGAGGTGATCCGGGTCTGGTTCTGCAACCACCGGCAGAAAGAGAAACGCATCAATCCCTCCAGTGCCACCCCTCCCCTGCCCAGCCAGCCCCCCACTGCCCCACCAACGCACAAACCGCCCTGCTACAGCCCTCACATGATGTCCAGCCAGCTGTCGCAGGCCGTGACCAGTCTCAGCACAACAGTGACCACCATGTCGCCCGTCTGCTCCCTGACTTCCAGCCTCACCTCCACCCACCCCTCTCTCAGCTCCGCACCCTCCCCGgtgactcctcctcctccccgcaGCACGGCCAGCCCAGCCACTCCCAGCCACAGCACACTCAACCTCAACACAGGCTTATGGCGTATGGGTAAAAAGAACGGTGACGTGTCTAACTACATCACCGATTTTGCTGCAAACTTGAGGAACACTGTGATGGGAGTTAACACAGGGATGAACCAAGCCCTCCTCGGTAACAATCCCCTGGCCACTATCCaagCCCTAGCAGCCAGTGGTGGCCAGCTGCCCCTTTCCAGTCTTGAGGGGGCCAGTAAGGTGATGCTGGGGGCCTGTGGGAGCCAGGGAGGGGgcctcccctcctccttcttcctcaACCACCCCGCCCTCCTCCACATGGGCCAGAACCCCGGCGCTGGACTGCTCAGCGCTGCCATAGCCAAAGCCTCCCAGGCCTCCCCCTTCCCCTCGGCCAGCAGCATCAGCCCCACCCTCTGCTCCCCCTCGCCCTGTTCCAGCCCCGCCTCTTCCTGCTCCTCCAGCGAAATGGCACACAGCCCGCCCTCTCTGGGCGGAGCCAAGATTGAGTGACAGCGCCAAGGGCCaatcagagaggaggaggaaggaggaaacgAGAACATCGCCTTTCACACCAAagctatctctttctctctcttgcgctcttcttctgttattttatttttttgcaatggctctctctctctctttctctcccagtCTTTCGATGCCAAAAATACACagaatgaaagaggagagagggagagaaagaa

Function

GO: NA

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101229 lncRNA upstream 25896 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA upstream 25896 24520765 ~ 24534169 (+) False dedd1
TU101238 lncRNA upstream 25896 24520765 ~ 24534169 (+) False dedd1
XR_005639733.1 lncRNA upstream 71223 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA upstream 79942 24468835 ~ 24480123 (+) True LOC120562289
TU101425 lncRNA downstream 201534 24800241 ~ 24804853 (+) True G75798
TU101430 lncRNA downstream 224319 24823026 ~ 24824765 (+) True G75803
TU101426 lncRNA downstream 264890 24863597 ~ 24863843 (+) False grik5
TU101431 lncRNA downstream 275297 24874004 ~ 24937218 (+) True G75804
TU101604 lncRNA downstream 516849 25115556 ~ 25115757 (+) True G75941
XM_039805271.1 mRNA upstream 25789 24520735 ~ 24534276 (+) False dedd1
XM_039805272.1 mRNA upstream 25789 24520735 ~ 24534276 (+) False dedd1
XM_039805938.1 mRNA upstream 45710 24492915 ~ 24514355 (+) True atp1a3b
XM_039805939.1 mRNA upstream 45710 24492915 ~ 24514355 (+) False atp1a3b
XM_039805942.1 mRNA upstream 94047 24387917 ~ 24466018 (+) True si:ch73-22o12.1
XM_039805667.1 mRNA downstream 22993 24621700 ~ 24677297 (+) True erfl3
XM_039806401.1 mRNA downstream 90593 24689300 ~ 24729988 (+) True cicb
XM_039806402.1 mRNA downstream 90593 24689300 ~ 24729988 (+) False cicb
XM_039806403.1 mRNA downstream 90593 24689300 ~ 24729988 (+) False cicb
XM_039806407.1 mRNA downstream 138824 24737531 ~ 24767436 (+) True gsk3ab
TU101208 other upstream 123246 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 123295 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 505737 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 527620 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 680650 23873916 ~ 23879415 (+) False LOC120563047
TU101448 other downstream 316547 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 893107 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 903893 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1541194 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 2209411 26808118 ~ 26815391 (+) True G76315

Expression Profile